Browse Site Data
GenomesNitrogen Availability Experiment: N deprivation for 24 h
Note:Report probesets with q<=0.05
Number of probesets to report in each category: up to 20
Report intergenic probesets: no See all experiments of Nitrogen Availability: Here
Upregulated Probesets in MED4
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MED4_ARR_0368_x_at | PMM0370 | putative cyanate ABC transporter, substrate binding protein | 2748 | 4.06455 | 0.0 |
| MED4_ARR_0915_x_at | PMM0920 | Glutamine synthetase, glutamate--ammonia ligase | 3376 | 3.92175 | 0.0 |
| MED4_ARR_0965_x_at | PMM0970 | putative urea ABC transporter, substrate binding protein | 3427 | 3.86942 | 0.0 |
| MED4_ARR_0030_x_at | PMM0030 | possible Transcription factor TFIID (or TATA-b | 2374 | 3.61973 | 0.0 |
| MED4_ARR_0953_x_at | PMM0958 | conserved hypothetical | 3415 | 3.52674 | 0.0 |
| MED4_ARR_0334_x_at | PMM0336 | conserved hypothetical | 2691 | 3.47511 | 0.0 |
| MED4_ARR_1452_x_at | PMM1462 | conserved hypothetical protein | 4016 | 3.12866 | 0.0 |
| MED4_ARR_0686_at | PMM0690 | possible high light inducible protein | 3919 | 2.86903 | 0.0 |
| MED4_ARR_0814_x_at | PMM0819 | hypothetical | 3258 | 2.80574 | 0.0 |
| MED4_ARR_0683_x_at | PMM0687 | conserved hypothetical | 4653 | 2.69061 | 0.0 |
| MED4_ARR_1381_at | PMM1390 | possible high light inducible protein | 3918 | 2.64333 | 0.0 |
| MED4_ARR_0681_x_at | PMM0684 | possible Zinc finger, C2H2 type | 2713 | 2.61635 | 0.0 |
| MED4_ARR_0685_x_at | PMM0689 | possible high light inducible protein | 3099 | 2.58908 | 0.0 |
| MED4_ARR_1128_x_at | PMM1134 | possible Phosphatidylinositol-specific phospho | 3633 | 2.50654 | 0.0 |
| MED4_ARR_0335_x_at | PMM0337 | conserved hypothetical protein | 2693 | 2.38597 | 0.0 |
| MED4_ARR_0372_at | PMM0374 | mttA/Hcf106 family | 2703 | 2.22201 | 0.0404858 |
| MED4_ARR_1255_x_at | PMM1262 | SOS function regulatory protein, LexA repressor | 3773 | 2.18082 | 0.0 |
| MED4_ARR_1395_at | PMM1404 | possible high light inducible protein | 3919 | 2.03488 | 0.0 |
| MED4_ARR_0369_x_at | PMM0371 | putative cyanate ABC transporter | 2749 | 1.92816 | 0.0 |
| MED4_ARR_0086_x_at | PMM0087 | conserved hypothetical protein | 2435 | 1.87589 | 0.0 |
Down-regulated Probesets in MED4
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MED4_ARR_1442_x_at | PMM1452 | ATP synthase, delta (OSCP) subunit | 4006 | -4.32897 | 0.0 |
| MED4_ARR_1443_x_at | PMM1453 | ATP synthase B/B' CF(0) | 4007 | -3.8186 | 0.0 |
| MED4_ARR_1444_x_at | PMM1454 | ATP synthase B/B' CF(0) | 4008 | -3.75132 | 0.0 |
| MED4_ARR_1445_x_at | PMM1455 | ATP synthase subunit c | 4009 | -3.09826 | 0.0 |
| MED4_ARR_0547_x_at | PMM0550 | Ribulose bisphosphate carboxylase, large chain | 2944 | -3.05897 | 0.0 |
| MED4_ARR_0548_x_at | PMM0551 | Ribulose bisphosphate carboxylase, small chain | 2945 | -2.79367 | 0.0 |
| MED4_ARR_0896_x_at | PMM0901 | heat shock protein HtpG | 3357 | -2.78883 | 0.0 |
| MED4_ARR_1617_x_at | PMM1629 | Type II alternative RNA polymerase sigma factor, sigma-70 family | 4184 | -2.75777 | 0.0 |
| MED4_ARR_0450_x_at | PMM0452 | GroEL2 protein (Chaperonin cpn60 2) | 2844 | -2.59259 | 0.0 |
| MED4_ARR_1426_x_at | PMM1436 | GroEL protein (Chaperonin cpn60) | 3990 | -2.5745 | 0.0 |
| MED4_ARR_1498_x_at | PMM1508 | Elongation factor Tu | 4063 | -2.57281 | 0.0 |
| MED4_ARR_0546_x_at | PMM0549 | carboxysome shell protein CsoS1 | 2943 | -2.57263 | 0.0 |
| MED4_ARR_1441_x_at | PMM1451 | ATP synthase F1, alpha subunit | 4005 | -2.50828 | 0.0 |
| MED4_ARR_1497_x_at | PMM1507 | 30S ribosomal protein S10 | 4062 | -2.49135 | 0.0 |
| MED4_ARR_1447_x_at | PMM1457 | possible ATP synthase subunit 1 | 4011 | -2.42996 | 0.0 |
| MED4_ARR_1440_x_at | PMM1450 | ATP synthase gamma subunit | 4004 | -2.3481 | 0.0 |
| MED4_ARR_0345_at | PMM0347 | conserved hypothetical | 2709 | -2.29498 | 0.0 |
| MED4_ARR_1544_x_at | PMM1554 | 30S Ribosomal protein S19 | 4109 | -2.28718 | 0.0 |
| MED4_ARR_0777_x_at | PMM0781 | Fructose-bisphosphate/sedoheptulose-1, 7-bisphosph ate aldolase | 3212 | -2.26716 | 0.0 |
| MED4_ARR_1540_x_at | PMM1550 | 50S ribosomal protein L29 | 4105 | -2.22292 | 0.0 |
Upregulated Probesets in MIT9313
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MIT9313_ARR_0975_x_at | PMT0990 | possible high light inducible protein | 3918 | 8.31513 | 0.0 |
| MIT9313_ARR_0976_x_at | PMT0991 | possible tRNA synthetases class I (E and Q) | 4995 | 7.68728 | 0.0 |
| MIT9313_ARR_0977_at | PMT0992 | possible high light inducible protein | 3918 | 6.99556 | 0.0 |
| MIT9313_ARR_2221_x_at | PMT2239 | Ferredoxin--nitrite reductase | 5786 | 4.98006 | 0.0 |
| MIT9313_ARR_2222_x_at | PMT2240 | Formate and nitrite transporters | 5788 | 4.09552 | 0.0 |
| MIT9313_ARR_1813_x_at | PMT1831 | Global nitrogen regulatory protein, CRP family of transcriptional regulators | 2596 | 3.54274 | 0.0 |
| MIT9313_ARR_0936_x_at | PMT0951 | conserved hypothetical protein | 2756 | 3.37137 | 0.0 |
| MIT9313_ARR_2211_x_at | PMT2229 | putative urea ABC transporter, substrate binding protein | 3427 | 3.25856 | 0.0 |
| MIT9313_ARR_0949_x_at | PMT0964 | conserved hypothetical protein | 2761 | 3.14534 | 0.0 |
| MIT9313_ARR_1128_x_at | PMT1144 | conserved hypothetical protein | 5137 | 3.03628 | 0.0 |
| MIT9313_ARR_2223_x_at | PMT2241 | possible Homeobox domain | 5789 | 2.90177 | 0.00569801 |
| MIT9313_ARR_0893_x_at | PMT0908 | Band 7 protein | 2876 | 2.45099 | 0.0 |
| MIT9313_ARR_1835_x_at | PMT1853 | Ammonium transporter family | 2613 | 2.21911 | 0.0 |
| MIT9313_ARR_0480_at | PMT0488 | possible Integrase Zinc binding domain | 6233 | 2.1949 | 0.0 |
| MIT9313_ARR_1613_x_at | PMT1631 | conserved hypothetical protein | 2434 | 2.19186 | 0.00569801 |
| MIT9313_ARR_2156_x_at | PMT2174 | Fatty acid desaturase, type 1 | 4227 | 2.15242 | 0.0 |
| MIT9313_ARR_0341_x_at | PMT0346 | Type II alternative RNA polymerase sigma factor, sigma-70 family | 3800 | 2.07856 | 0.0 |
| MIT9313_ARR_1297_x_at | PMT1314 | possible high light inducible protein | 5220 | 2.03603 | 0.0 |
| MIT9313_ARR_0375_x_at | PMT0382 | possible Signal peptidase I | 4523 | 1.97214 | 0.0 |
| MIT9313_ARR_0992_x_at | PMT1007 | hypothetical | 5010 | 1.95305 | 0.0 |
Down-regulated Probesets in MIT9313
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MIT9313_ARR_1462_x_at | PMT1479 | possible Extracellular link domain | 5306 | -4.61446 | 0.0 |
| MIT9313_ARR_1557_x_at | PMT1574 | possible membrane permease or ABC transporter component | 3179 | -3.47043 | 0.0 |
| MIT9313_ARR_1771_x_at | PMT1789 | S1 RNA binding domain:Ribonuclease E and G | 4056 | -3.36203 | 0.00569801 |
| MIT9313_ARR_0526_x_at | PMT0535 | conserved hypothetical protein | 2660 | -3.00508 | 0.00569801 |
| MIT9313_ARR_1716_x_at | PMT1734 | 50S ribosomal protein L23 | 4111 | -2.88775 | 0.0 |
| MIT9313_ARR_0272_x_at | PMT0276 | putative menaquinone biosynthesis methlytransferase (spore ge... | 2823 | -2.77988 | 0.0427184 |
| MIT9313_ARR_1724_x_at | PMT1742 | 50S Ribosomal protein L14 | 4103 | -2.65883 | 0.0 |
| MIT9313_ARR_1726_x_at | PMT1744 | 50S ribosomal protein L5 | 4101 | -2.5811 | 0.0 |
| MIT9313_ARR_1715_x_at | PMT1733 | 50S ribosomal protein L4 | 4112 | -2.55708 | 0.0 |
| MIT9313_ARR_1717_x_at | PMT1735 | 50S ribosomal protein L2 | 4110 | -2.55547 | 0.0 |
| MIT9313_ARR_1570_x_at | PMT1588 | acetyl-CoA carboxylase, biotin carboxylase subunit | 2407 | -2.55182 | 0.0380762 |
| MIT9313_ARR_1725_x_at | PMT1743 | 50S ribosomal protein L24 | 4102 | -2.54449 | 0.0 |
| MIT9313_ARR_1714_x_at | PMT1732 | 50S ribosomal protein L3 | 4113 | -2.46629 | 0.0 |
| MIT9313_ARR_1450_x_at | PMT1467 | ATP synthase F1, alpha subunit | 4005 | -2.42347 | 0.0 |
| MIT9313_ARR_1723_x_at | PMT1741 | 30S Ribosomal protein S17 | 4104 | -2.41299 | 0.0 |
| MIT9313_ARR_2144_x_at | PMT2162 | possible Tripartite transporter component (TRAP-T family) | 5746 | -2.3997 | 0.030303 |
| MIT9313_ARR_1719_x_at | PMT1737 | 50S ribosomal protein L22 | 4108 | -2.34044 | 0.0 |
| MIT9313_ARR_1453_x_at | PMT1470 | ATP synthase B/B' CF(0) | 4008 | -2.31383 | 0.0 |
| MIT9313_ARR_1065_x_at | PMT1081 | RNA-binding protein RbpD | 3902 | -2.29991 | 0.0 |
| MIT9313_ARR_2243_x_at | PMT2261 | Argininosuccinate synthase | 4263 | -2.29959 | 0.00813008 |