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Nitrogen Availability Experiment: N deprivation for 24 h
Note:
Report probesets with q<=0.1
Number of probesets to report in each category: up to 50
Report intergenic probesets: no

See all experiments of Nitrogen Availability: Here

Upregulated Probesets in MED4

ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_0368_x_at PMM0370 putative cyanate ABC transporter, substrate binding protein 2748 4.06455 0.0
MED4_ARR_0915_x_at PMM0920 Glutamine synthetase, glutamate--ammonia ligase 3376 3.92175 0.0
MED4_ARR_0965_x_at PMM0970 putative urea ABC transporter, substrate binding protein 3427 3.86942 0.0
MED4_ARR_0030_x_at PMM0030 possible Transcription factor TFIID (or TATA-b 2374 3.61973 0.0
MED4_ARR_0953_x_at PMM0958 conserved hypothetical 3415 3.52674 0.0
MED4_ARR_0334_x_at PMM0336 conserved hypothetical 2691 3.47511 0.0
MED4_ARR_1452_x_at PMM1462 conserved hypothetical protein 4016 3.12866 0.0
MED4_ARR_0686_at PMM0690 possible high light inducible protein 2.86903 0.0
MED4_ARR_0814_x_at PMM0819 hypothetical 3258 2.80574 0.0
MED4_ARR_0683_x_at PMM0687 conserved hypothetical 2.69061 0.0
MED4_ARR_1381_at PMM1390 possible high light inducible protein 3918 2.64333 0.0
MED4_ARR_0681_x_at PMM0684 possible Zinc finger, C2H2 type 2713 2.61635 0.0
MED4_ARR_0685_x_at PMM0689 possible high light inducible protein 3099 2.58908 0.0
MED4_ARR_1128_x_at PMM1134 possible Phosphatidylinositol-specific phospho 3633 2.50654 0.0
MED4_ARR_0335_x_at PMM0337 conserved hypothetical protein 2693 2.38597 0.0
MED4_ARR_0372_at PMM0374 mttA/Hcf106 family 2.22201 0.040486
MED4_ARR_1255_x_at PMM1262 SOS function regulatory protein, LexA repressor 3773 2.18082 0.0
MED4_ARR_1395_at PMM1404 possible high light inducible protein 3919 2.03488 0.0
MED4_ARR_0369_x_at PMM0371 putative cyanate ABC transporter 2749 1.92816 0.0
MED4_ARR_0086_x_at PMM0087 conserved hypothetical protein 2435 1.87589 0.0
MED4_ARR_1611_x_at PMM1623 single-stranded DNA-binding protein 4178 1.85111 0.0
MED4_ARR_0357_at PMM0359 hypothetical 2728 1.7829 0.0
MED4_ARR_0363_x_at PMM0365 possible DsrE-like protein 2737 1.72204 0.0
MED4_ARR_0244_x_at PMM0246 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 1.67965 0.0
MED4_ARR_0243_x_at PMM0245 cob(I)alamin adenosyltransferase 2595 1.61138 0.0
MED4_ARR_1036_x_at PMM1041 conserved hypothetical protein 3531 1.5476 0.043636
MED4_ARR_0218_x_at PMM0220 conserved hypothetical protein (NCBI) 5346 1.53534 0.0
MED4_ARR_0085_x_at PMM0086 Conserved hypothetical protein 2434 1.51036 0.0
MED4_ARR_0149_x_at PMM0150 putative NADH dehydrogenase subunit (chain 4) 2501 1.50483 0.0
MED4_ARR_0332_x_at PMM0334 conserved hypothetical protein 2686 1.47198 0.0
MED4_ARR_0370_x_at PMM0372 putative cyanate ABC transporter 2750 1.46955 0.029268
MED4_ARR_1552_x_at PMM1562 RecA bacterial DNA recombination protein 4117 1.45543 0.0
MED4_ARR_0393_x_at PMM0395 Uncharacterized protein conserved in bacteria 2781 1.44999 0.0
MED4_ARR_1117_x_at PMM1123 putative hydrogenase accessory protein 3615 1.44664 0.0
MED4_ARR_0366_x_at PMM0368 conserved hypothetical protein 2740 1.43586 0.0
MED4_ARR_0722_x_at PMM0726 hypothetical 3148 1.41842 0.0
MED4_ARR_0444_x_at PMM0446 putative cytochrome c oxidase, subunit 2 2838 1.41083 0.0
MED4_ARR_1687_x_at PMM1700 Aconitate hydratase B 4256 1.38997 0.0
MED4_ARR_1591_x_at PMM1602 conserved hypothetical protein 4157 1.37634 0.016949
MED4_ARR_1163_x_at PMM1169 hypothetical 3679 1.37027 0.0
MED4_ARR_1453_x_at PMM1463 Nitrogen regulatory protein P-II 4017 1.30877 0.027624
MED4_ARR_1304_x_at PMM1313 Clp protease proteolytic subunit 3825 1.30367 0.00578
MED4_ARR_1045_x_at PMM1050 conserved hypothetical protein 3541 1.29969 0.064189
MED4_ARR_0035_x_at PMM0035 soluble hydrogenase small subunit 2379 1.29236 0.011429
MED4_ARR_0144_x_at PMM0145 NADH dehydrogenase I subunit M 2496 1.27026 0.029268
MED4_ARR_0791_x_at PMM0795 conserved hypothetical protein 3226 1.24412 0.064189
MED4_ARR_0445_x_at PMM0447 Uncharacterized protein required for cytochrome oxidase assembly 2839 1.237 0.033058
MED4_ARR_1069_x_at PMM1074 Glucose-6-phosphate dehydrogenase 3565 1.23495 0.0
MED4_ARR_0361_x_at PMM0363 possible MarR family 2733 1.23124 0.043636
MED4_ARR_0446_x_at PMM0448 putative protoheme IX farnesyltransferase 2840 1.21234 0.029268

Down-regulated Probesets in MED4
ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_1442_x_at PMM1452 ATP synthase, delta (OSCP) subunit 4006 -4.32897 0.0
MED4_ARR_1443_x_at PMM1453 ATP synthase B/B' CF(0) 4007 -3.8186 0.0
MED4_ARR_1444_x_at PMM1454 ATP synthase B/B' CF(0) 4008 -3.75132 0.0
MED4_ARR_1445_x_at PMM1455 ATP synthase subunit c 4009 -3.09826 0.0
MED4_ARR_0547_x_at PMM0550 Ribulose bisphosphate carboxylase, large chain 2944 -3.05897 0.0
MED4_ARR_0548_x_at PMM0551 Ribulose bisphosphate carboxylase, small chain 2945 -2.79367 0.0
MED4_ARR_0896_x_at PMM0901 heat shock protein HtpG 3357 -2.78883 0.0
MED4_ARR_1617_x_at PMM1629 Type II alternative RNA polymerase sigma factor, sigma-70 family 4184 -2.75777 0.0
MED4_ARR_0450_x_at PMM0452 GroEL2 protein (Chaperonin cpn60 2) 2844 -2.59259 0.0
MED4_ARR_1426_x_at PMM1436 GroEL protein (Chaperonin cpn60) 3990 -2.5745 0.0
MED4_ARR_1498_x_at PMM1508 Elongation factor Tu 4063 -2.57281 0.0
MED4_ARR_0546_x_at PMM0549 carboxysome shell protein CsoS1 2943 -2.57263 0.0
MED4_ARR_1441_x_at PMM1451 ATP synthase F1, alpha subunit 4005 -2.50828 0.0
MED4_ARR_1497_x_at PMM1507 30S ribosomal protein S10 4062 -2.49135 0.0
MED4_ARR_1447_x_at PMM1457 possible ATP synthase subunit 1 4011 -2.42996 0.0
MED4_ARR_1440_x_at PMM1450 ATP synthase gamma subunit 4004 -2.3481 0.0
MED4_ARR_0345_at PMM0347 conserved hypothetical 2709 -2.29498 0.0
MED4_ARR_1544_x_at PMM1554 30S Ribosomal protein S19 4109 -2.28718 0.0
MED4_ARR_0777_x_at PMM0781 Fructose-bisphosphate/sedoheptulose-1, 7-bisphosph ate aldolase 3212 -2.26716 0.0
MED4_ARR_1540_x_at PMM1550 50S ribosomal protein L29 4105 -2.22292 0.0
MED4_ARR_1393_x_at PMM1402 Conserved hypothetical protein 3946 -2.22028 0.0
MED4_ARR_0763_x_at PMM0767 Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase 3197 -2.19475 0.0
MED4_ARR_0305_at PMM0307 hypothetical 2658 -2.16891 0.0
MED4_ARR_1693_x_at PMM1706 30S ribosomal protein S6 4262 -2.16251 0.0
MED4_ARR_0762_x_at PMM0766 Ribulose-phosphate 3-epimerase 3196 -2.14375 0.0
MED4_ARR_0781_x_at PMM0785 phosphoribulokinase 3216 -2.12032 0.0
MED4_ARR_0750_x_at PMM0754 putative Elongation factor Ts 3184 -2.06704 0.0
MED4_ARR_1650_x_at PMM1662 50S ribosomal protein L20 4217 -2.03243 0.0
MED4_ARR_1548_x_at PMM1558 50S ribosomal protein L3 4113 -2.01585 0.0
MED4_ARR_1568_at PMM1578 Photosystem I protein PsaD 4133 -1.97601 0.0
MED4_ARR_1429_x_at PMM1439 ATP synthase, Epsilon subunit 3993 -1.96231 0.0
MED4_ARR_1649_at PMM1661 50S ribosomal protein L35 4216 -1.93346 0.0
MED4_ARR_1527_x_at PMM1537 30S ribosomal protein S13 4092 -1.92847 0.0
MED4_ARR_1510_x_at PMM1520 photosystem I subunit VIII (PsaI) 4075 -1.90774 0.0
MED4_ARR_1542_x_at PMM1552 30S ribosomal protein S3 4107 -1.87714 0.0
MED4_ARR_1541_x_at PMM1551 50S ribosomal protein L16 4106 -1.86532 0.0
MED4_ARR_0467_x_at PMM0469 Photosystem I PsaF protein (subunit III) 2862 -1.86209 0.0
MED4_ARR_1643_x_at PMM1655 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) 4210 -1.8485 0.0
MED4_ARR_0408_x_at PMM0410 30S ribosomal protein S4 2798 -1.82755 0.0
MED4_ARR_1546_x_at PMM1556 50S ribosomal protein L23 4111 -1.80985 0.0
MED4_ARR_0537_at PMM0540 possible photosystem I reaction centre subunit XII (PsaM) 2934 -1.80323 0.0
MED4_ARR_1446_x_at PMM1456 ATP synthase A subunit 4010 -1.80165 0.029268
MED4_ARR_1543_x_at PMM1553 50S ribosomal protein L22 4108 -1.78647 0.0
MED4_ARR_0023_x_at PMM0023 Glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating) 2367 -1.77528 0.0
MED4_ARR_0016_x_at PMM0016 Heat shock protein GrpE 2360 -1.77378 0.0
MED4_ARR_1539_x_at PMM1549 30S Ribosomal protein S17 4104 -1.77109 0.0
MED4_ARR_0706_x_at PMM0710 ABC transporter, substrate binding protein, phosphate 3129 -1.77059 0.0
MED4_ARR_0580_x_at PMM0583 Uroporphyrinogen decarboxylase (URO-D) 2977 -1.76736 0.0
MED4_ARR_0451_x_at PMM0453 3-oxoacyl-[acyl-carrier protein] reductase 2846 -1.71879 0.029268
MED4_ARR_0619_x_at PMM0622 conserved hypothetical protein 3016 -1.71687 0.031111

Upregulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_0975_x_at PMT0990 possible high light inducible protein 3918 8.31513 0.0
MIT9313_ARR_0976_x_at PMT0991 possible tRNA synthetases class I (E and Q) 4995 7.68728 0.0
MIT9313_ARR_0977_at PMT0992 possible high light inducible protein 3918 6.99556 0.0
MIT9313_ARR_2221_x_at PMT2239 Ferredoxin--nitrite reductase 5786 4.98006 0.0
MIT9313_ARR_2222_x_at PMT2240 Formate and nitrite transporters 5788 4.09552 0.0
MIT9313_ARR_1813_x_at PMT1831 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 3.54274 0.0
MIT9313_ARR_0936_x_at PMT0951 conserved hypothetical protein 2756 3.37137 0.0
MIT9313_ARR_2211_x_at PMT2229 putative urea ABC transporter, substrate binding protein 3427 3.25856 0.0
MIT9313_ARR_0949_x_at PMT0964 conserved hypothetical protein 2761 3.14534 0.0
MIT9313_ARR_1128_x_at PMT1144 conserved hypothetical protein 5137 3.03628 0.0
MIT9313_ARR_2223_x_at PMT2241 possible Homeobox domain 5789 2.90177 0.005698
MIT9313_ARR_0973_x_at PMT0988 hypothetical 2.45388 0.079316
MIT9313_ARR_0893_x_at PMT0908 Band 7 protein 2876 2.45099 0.0
MIT9313_ARR_1835_x_at PMT1853 Ammonium transporter family 2613 2.21911 0.0
MIT9313_ARR_0480_at PMT0488 possible Integrase Zinc binding domain 2.1949 0.0
MIT9313_ARR_1613_x_at PMT1631 conserved hypothetical protein 2434 2.19186 0.005698
MIT9313_ARR_2156_x_at PMT2174 Fatty acid desaturase, type 1 4227 2.15242 0.0
MIT9313_ARR_0341_x_at PMT0346 Type II alternative RNA polymerase sigma factor, sigma-70 family 3800 2.07856 0.0
MIT9313_ARR_1297_x_at PMT1314 possible high light inducible protein 5220 2.03603 0.0
MIT9313_ARR_0375_x_at PMT0382 possible Signal peptidase I 1.97214 0.0
MIT9313_ARR_0992_x_at PMT1007 hypothetical 5010 1.95305 0.0
MIT9313_ARR_1324_x_at PMT1341 putative cytochrome c oxidase, subunit II 2838 1.95272 0.0
MIT9313_ARR_2248_x_at PMT2266 conserved hypothetical 4267 1.93435 0.082718
MIT9313_ARR_0924_x_at PMT0939 hypothetical protein 3139 1.90061 0.025641
MIT9313_ARR_0556_x_at PMT0565 6-phosphogluconate dehydrogenase 3200 1.89705 0.0
MIT9313_ARR_1856_x_at PMT1874 conserved hypothetical 5547 1.81346 0.0
MIT9313_ARR_0922_x_at PMT0937 conserved hypothetical protein 2740 1.79126 0.005698
MIT9313_ARR_1526_x_at PMT1543 conserved hypothetical protein 2570 1.73826 0.030303
MIT9313_ARR_0639_x_at PMT0649 conserved hypothetical protein 3403 1.73207 0.005698
MIT9313_ARR_1928_x_at PMT1946 Phosphorylase 4156 1.68799 0.0
MIT9313_ARR_2162_x_at PMT2180 conserved hypothetical 5753 1.65467 0.0
MIT9313_RNA_0028_at 1.6527 0.0
MIT9313_RNA_0036_at 1.63743 0.0
MIT9313_ARR_0671_x_at PMT0683 Predicted transcriptional regulator containing the HTH domain 3365 1.6227 0.035051
MIT9313_ARR_0971_x_at PMT0986 possible bZIP transcription factor 4985 1.61354 0.005698
MIT9313_ARR_2228_x_at PMT2246 Type II alternative RNA polymerase sigma factor, sigma-70 family 4253 1.5954 0.0
MIT9313_ARR_0038_x_at PMT0038 possible Penicillin amidase 2376 1.58947 0.0
MIT9313_ARR_0039_x_at PMT0039 conserved hypothetical protein 2377 1.56698 0.005698
MIT9313_ARR_0791_x_at PMT0805 two-component response regulator 4749 1.5572 0.0
MIT9313_ARR_1590_x_at PMT1608 Uncharacterized protein conserved in bacteria 2422 1.55476 0.0
MIT9313_ARR_1815_x_at PMT1833 conserved hypothetical protein 2598 1.55422 0.025641
MIT9313_ARR_0592_x_at PMT0601 Glutamine synthetase, glutamate--ammonia ligase 3376 1.54235 0.0
MIT9313_ARR_1466_x_at PMT1483 hypothetical 5307 1.53441 0.0
MIT9313_ARR_2224_x_at PMT2242 Anthranilate phosphoribosyltransferase 5790 1.53135 0.005698
MIT9313_ARR_1138_x_at PMT1154 possible high light inducible protein 3919 1.50027 0.0
MIT9313_ARR_0831_x_at PMT0845 possible Histidine kinase-, DNA gyrase B-, phy 4787 1.48973 0.005698
MIT9313_ARR_1325_x_at PMT1342 Cytochrome c oxidase, subunit I 2837 1.48187 0.0
MIT9313_ARR_0197_x_at PMT0201 conserved hypothetical protein 3675 1.45699 0.005698
MIT9313_ARR_1525_x_at PMT1542 conserved hypothetical protein 5346 1.44731 0.0
MIT9313_ARR_1137_x_at PMT1153 possible high light inducible protein 3634 1.43535 0.0

Down-regulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_1462_x_at PMT1479 possible Extracellular link domain 5306 -4.61446 0.0
MIT9313_ARR_1557_x_at PMT1574 possible membrane permease or ABC transporter component -3.47043 0.0
MIT9313_ARR_1771_x_at PMT1789 S1 RNA binding domain:Ribonuclease E and G 4056 -3.36203 0.005698
MIT9313_ARR_0526_x_at PMT0535 conserved hypothetical protein 2660 -3.00508 0.005698
MIT9313_ARR_2125_x_at PMT2143 ABC transporter, multidrug efflux type -2.89028 0.083099
MIT9313_ARR_1716_x_at PMT1734 50S ribosomal protein L23 4111 -2.88775 0.0
MIT9313_ARR_0249_x_at PMT0253 possible Galanin 4436 -2.78635 0.071313
MIT9313_ARR_0272_x_at PMT0276 putative menaquinone biosynthesis methlytransferase (spore ge... -2.77988 0.042718
MIT9313_ARR_1724_x_at PMT1742 50S Ribosomal protein L14 4103 -2.65883 0.0
MIT9313_ARR_2141_x_at PMT2159 Uncharacterized conserved protein 5741 -2.61827 0.071313
MIT9313_ARR_1726_x_at PMT1744 50S ribosomal protein L5 4101 -2.5811 0.0
MIT9313_ARR_1715_x_at PMT1733 50S ribosomal protein L4 4112 -2.55708 0.0
MIT9313_ARR_1717_x_at PMT1735 50S ribosomal protein L2 4110 -2.55547 0.0
MIT9313_ARR_1570_x_at PMT1588 acetyl-CoA carboxylase, biotin carboxylase subunit 2407 -2.55182 0.038076
MIT9313_ARR_1725_x_at PMT1743 50S ribosomal protein L24 4102 -2.54449 0.0
MIT9313_ARR_1714_x_at PMT1732 50S ribosomal protein L3 4113 -2.46629 0.0
MIT9313_ARR_1450_x_at PMT1467 ATP synthase F1, alpha subunit 4005 -2.42347 0.0
MIT9313_ARR_1723_x_at PMT1741 30S Ribosomal protein S17 4104 -2.41299 0.0
MIT9313_ARR_2144_x_at PMT2162 possible Tripartite transporter component (TRAP-T family) 5746 -2.3997 0.030303
MIT9313_ARR_0410_x_at PMT0417 ABC transporter, ATP binding domain, possibly Mn transporter 2996 -2.36045 0.086777
MIT9313_ARR_1719_x_at PMT1737 50S ribosomal protein L22 4108 -2.34044 0.0
MIT9313_ARR_1453_x_at PMT1470 ATP synthase B/B' CF(0) 4008 -2.31383 0.0
MIT9313_ARR_1065_x_at PMT1081 RNA-binding protein RbpD -2.29991 0.0
MIT9313_ARR_2243_x_at PMT2261 Argininosuccinate synthase 4263 -2.29959 0.00813
MIT9313_ARR_1718_x_at PMT1736 30S Ribosomal protein S19 4109 -2.28002 0.0
MIT9313_ARR_1228_x_at PMT1244 uridylate kinase 2916 -2.26926 0.030303
MIT9313_ARR_1886_x_at PMT1904 UDP-glucose 6-dehydrogenase 3772 -2.26286 0.03397
MIT9313_ARR_1740_x_at PMT1758 50S ribosomal protein L13 4087 -2.217 0.0
MIT9313_ARR_1451_x_at PMT1468 ATP synthase, delta (OSCP) subunit 4006 -2.15288 0.0
MIT9313_ARR_1452_x_at PMT1469 ATP synthase B/B' CF(0) 4007 -2.11402 0.0
MIT9313_ARR_1455_x_at PMT1472 ATP synthase A subunit 4010 -2.09594 0.0
MIT9313_ARR_1556_x_at PMT1573 ABC-transporter component -2.06562 0.0
MIT9313_ARR_1449_x_at PMT1466 ATP synthase gamma subunit 4004 -2.05548 0.0
MIT9313_ARR_0173_x_at PMT0177 L-aspartate oxidase 2450 -2.05047 0.005698
MIT9313_ARR_1727_x_at PMT1745 30S ribosomal protein S8 4100 -2.02111 0.0
MIT9313_ARR_0892_x_at PMT0907 possible Octicosapeptide repeat -2.01586 0.0
MIT9313_ARR_1360_x_at PMT1377 polyribonucleotide nucleotidyltransferase 3701 -1.94367 0.0
MIT9313_ARR_0223_x_at PMT0227 30S ribosomal protein S4 2798 -1.91405 0.0
MIT9313_ARR_1721_x_at PMT1739 50S ribosomal protein L16 4106 -1.89727 0.0
MIT9313_ARR_1454_x_at PMT1471 Eubacterial and plasma membrane ATP synthase subunit C:ATP sy... 5301 -1.85725 0.0
MIT9313_ARR_1722_x_at PMT1740 50S ribosomal protein L29 4105 -1.84982 0.0
MIT9313_ARR_1332_x_at PMT1349 conserved hypothetical protein 5232 -1.84625 0.083099
MIT9313_ARR_1728_x_at PMT1746 50S ribosomal protein L6 4099 -1.82168 0.0
MIT9313_ARR_1741_x_at PMT1759 30S ribosomal protein S9 4086 -1.79405 0.0
MIT9313_ARR_1720_x_at PMT1738 30S ribosomal protein S3 4107 -1.7354 0.0
MIT9313_ARR_1938_x_at PMT1956 3-oxoacyl-[acyl-carrier-protein] synthase II 4164 -1.7244 0.0
MIT9313_ARR_1738_x_at PMT1756 50S ribosomal protein L17 4089 -1.69653 0.0
MIT9313_ARR_0574_x_at PMT0583 putative Elongation factor Ts, EF-Ts 3184 -1.64611 0.005698
MIT9313_ARR_1730_x_at PMT1748 30S ribosomal protein S5 4097 -1.64456 0.0
MIT9313_ARR_2072_x_at PMT2090 50S ribosomal protein L10 2553 -1.63165 0.0