logo
Nitrogen Availability Experiment: N deprivation for 48 h
Note:
Report probesets with q<=0.1
Number of probesets to report in each category: up to 50
Report intergenic probesets: no

See all experiments of Nitrogen Availability: Here

Upregulated Probesets in MED4

ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_0030_x_at PMM0030 possible Transcription factor TFIID (or TATA-b 2374 4.46645 0.0
MED4_ARR_0686_at PMM0690 possible high light inducible protein 4.12561 0.0
MED4_ARR_1395_at PMM1404 possible high light inducible protein 3919 4.1079 0.0
MED4_ARR_0953_x_at PMM0958 conserved hypothetical 3415 4.0091 0.0
MED4_ARR_0685_x_at PMM0689 possible high light inducible protein 3099 3.95359 0.0
MED4_ARR_0368_x_at PMM0370 putative cyanate ABC transporter, substrate binding protein 2748 3.91381 0.0
MED4_ARR_0965_x_at PMM0970 putative urea ABC transporter, substrate binding protein 3427 3.83477 0.0
MED4_ARR_0915_x_at PMM0920 Glutamine synthetase, glutamate--ammonia ligase 3376 3.79889 0.0
MED4_ARR_1381_at PMM1390 possible high light inducible protein 3918 3.19023 0.0
MED4_ARR_1452_x_at PMM1462 conserved hypothetical protein 4016 3.10789 0.0
MED4_ARR_0681_x_at PMM0684 possible Zinc finger, C2H2 type 2713 3.09611 0.0
MED4_ARR_0814_x_at PMM0819 hypothetical 3258 3.08983 0.0
MED4_ARR_0372_at PMM0374 mttA/Hcf106 family 2.88662 0.0
MED4_ARR_0813_s_at PMM0818 possible high light inducible protein 2.78998 0.0
MED4_ARR_0683_x_at PMM0687 conserved hypothetical 2.7732 0.0
MED4_ARR_0545_x_at PMM0548 HAM1 family protein 2942 2.63424 0.0
MED4_ARR_1382_x_at PMM1391 possible Helix-turn-helix protein, copG family 2.57686 0.005128
MED4_ARR_1552_x_at PMM1562 RecA bacterial DNA recombination protein 4117 2.52806 0.005128
MED4_ARR_1660_x_at PMM1672 Fatty acid desaturase, type 1 4227 2.44718 0.0
MED4_ARR_1388_x_at PMM1397 possible high light inducible protein 3939 2.43321 0.005128
MED4_ARR_0812_x_at PMM0817 possible high light inducible protein 2.43066 0.0
MED4_ARR_0086_x_at PMM0087 conserved hypothetical protein 2435 2.42699 0.0
MED4_ARR_1375_at PMM1384 possible high light inducible protein 3918 2.40223 0.0
MED4_ARR_1387_at PMM1396 possible high light inducible protein 3938 2.40136 0.005128
MED4_ARR_0992_x_at PMM0997 possible Protein of unknown function DUF67 3466 2.39881 0.0
MED4_ARR_0970_x_at PMM0975 conserved hypothetical protein 3436 2.34572 0.081174
MED4_ARR_0335_x_at PMM0337 conserved hypothetical protein 2693 2.3055 0.005128
MED4_ARR_0243_x_at PMM0245 cob(I)alamin adenosyltransferase 2595 2.28263 0.0
MED4_ARR_1255_x_at PMM1262 SOS function regulatory protein, LexA repressor 3773 2.23795 0.005128
MED4_ARR_1611_x_at PMM1623 single-stranded DNA-binding protein 4178 2.19946 0.005128
MED4_ARR_0361_x_at PMM0363 possible MarR family 2733 2.12144 0.005128
MED4_RNA_0028_at 2.11902 0.026923
MED4_ARR_0369_x_at PMM0371 putative cyanate ABC transporter 2749 2.10888 0.005128
MED4_ARR_1036_x_at PMM1041 conserved hypothetical protein 3531 2.0822 0.032491
MED4_RNA_0027_at 2.07542 0.05136
MED4_RNA_0018_at 2.06156 0.061966
MED4_ARR_0334_x_at PMM0336 conserved hypothetical 2691 2.05687 0.005128
MED4_ARR_1040_x_at PMM1045 conserved hypothetical 3536 2.05037 0.032491
MED4_ARR_0363_x_at PMM0365 possible DsrE-like protein 2737 2.04617 0.005128
MED4_ARR_1129_x_at PMM1135 possible high light inducible protein 3634 2.03859 0.02381
MED4_ARR_0931_x_at PMM0936 putative SOS mutagenesis protein UmuD 3392 2.02632 0.032491
MED4_ARR_0805_x_at PMM0810 hypothetical 3242 1.98406 0.005128
MED4_ARR_1128_x_at PMM1134 possible Phosphatidylinositol-specific phospho 3633 1.97775 0.02381
MED4_ARR_0336_x_at PMM0338 conserved hypothetical 2695 1.97708 0.043771
MED4_ARR_1469_x_at PMM1479 conserved hypothetical protein 4033 1.97628 0.026923
MED4_ARR_1163_x_at PMM1169 hypothetical 3679 1.95209 0.018868
MED4_ARR_0149_x_at PMM0150 putative NADH dehydrogenase subunit (chain 4) 2501 1.92368 0.014286
MED4_ARR_1376_at PMM1385 possible high light inducible protein 3919 1.89507 0.005128
MED4_ARR_0362_x_at PMM0364 possible Malic enzyme 1.86724 0.02381
MED4_ARR_1415_x_at PMM1424 possible Uncharacterized protein family UPF003 3976 1.84134 0.053922

Down-regulated Probesets in MED4
ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_1581_x_at PMM1592 phycoerythrobilin:ferredoxin oxidoreductase 4147 -4.34655 0.045603
MED4_ARR_0793_x_at PMM0797 possible mRNA binding protein 3228 -4.31382 0.061966
MED4_ARR_1005_x_at PMM1010 conserved hypothetical protein 3483 -4.0853 0.065678
MED4_ARR_0850_x_at PMM0855 conserved hypothetical 3296 -4.0818 0.086587
MED4_ARR_0760_x_at PMM0764 possible ABC transporter, ATP binding component 3194 -4.00588 0.061966
MED4_ARR_1443_x_at PMM1453 ATP synthase B/B' CF(0) 4007 -3.94992 0.0
MED4_ARR_0548_x_at PMM0551 Ribulose bisphosphate carboxylase, small chain 2945 -3.94326 0.0
MED4_ARR_1444_x_at PMM1454 ATP synthase B/B' CF(0) 4008 -3.8833 0.0
MED4_ARR_1207_x_at PMM1214 possible phosphatase 3724 -3.88144 0.081174
MED4_ARR_0973_x_at PMM0978 conserved membrane protein, multidrug efflux associated 3439 -3.80051 0.091787
MED4_ARR_0173_x_at PMM0174 probable O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase) 2525 -3.78966 0.078431
MED4_ARR_1563_x_at PMM1573 putative DNA repair and genetic recombination protein RecF 4128 -3.78014 0.068
MED4_ARR_0348_x_at PMM0350 possible TIR domain 2713 -3.69933 0.088926
MED4_ARR_1215_x_at PMM1222 possible glycosyl transferase 3732 -3.66152 0.084192
MED4_ARR_1401_x_at PMM1410 possible PTS system, Lactose/Cellobiose specif -3.62701 0.071028
MED4_ARR_0547_x_at PMM0550 Ribulose bisphosphate carboxylase, large chain 2944 -3.61779 0.0
MED4_ARR_1442_x_at PMM1452 ATP synthase, delta (OSCP) subunit 4006 -3.48064 0.0
MED4_ARR_1445_x_at PMM1455 ATP synthase subunit c 4009 -3.44973 0.0
MED4_ARR_0624_x_at PMM0627 light-harvesting complex protein 3022 -3.42693 0.0
MED4_ARR_0546_x_at PMM0549 carboxysome shell protein CsoS1 2943 -3.40014 0.0
MED4_ARR_1510_x_at PMM1520 photosystem I subunit VIII (PsaI) 4075 -3.35233 0.0
MED4_ARR_1493_x_at PMM1503 conserved hypothetical protein 4058 -3.22434 0.071028
MED4_ARR_0155_x_at PMM0156 predicted inorganic polyphosphate / ATP-NAD+ kinase 2507 -3.13983 0.061966
MED4_ARR_1426_x_at PMM1436 GroEL protein (Chaperonin cpn60) 3990 -3.07818 0.0
MED4_ARR_1513_x_at PMM1523 Photosystem I PsaB protein 4078 -3.05479 0.0
MED4_ARR_1509_x_at PMM1519 Photosystem I PsaL protein (subunit XI) 4074 -3.04161 0.0
MED4_ARR_0407_x_at PMM0409 putative Cystathionine gamma-synthase 2797 -3.02431 0.091787
MED4_ARR_0226_x_at PMM0228 Photosystem II manganese-stabilizing protein 2578 -2.95017 0.005128
MED4_ARR_0150_x_at PMM0151 Uncharacterized conserved protein 2502 -2.94884 0.091787
MED4_ARR_0706_x_at PMM0710 ABC transporter, substrate binding protein, phosphate 3129 -2.93626 0.0
MED4_ARR_1380_x_at PMM1389 possible Trypsin 3929 -2.92678 0.05136
MED4_ARR_1440_x_at PMM1450 ATP synthase gamma subunit 4004 -2.82337 0.005128
MED4_ARR_0671_x_at PMM0674 Aminotransferases class-I 3075 -2.77554 0.081174
MED4_ARR_0537_at PMM0540 possible photosystem I reaction centre subunit XII (PsaM) 2934 -2.7671 0.0
MED4_ARR_0313_x_at PMM0315 Photosystem II PsbB protein (CP47) 2666 -2.69021 0.005128
MED4_ARR_0467_x_at PMM0469 Photosystem I PsaF protein (subunit III) 2862 -2.6745 0.0
MED4_ARR_0095_x_at PMM0096 inositol monophosphate family protein 2446 -2.67083 0.074546
MED4_ARR_1498_x_at PMM1508 Elongation factor Tu 4063 -2.65049 0.0
MED4_ARR_0466_at PMM0468 Photosystem I PsaJ protein (subunit IX) 2861 -2.60584 0.0
MED4_ARR_0580_x_at PMM0583 Uroporphyrinogen decarboxylase (URO-D) 2977 -2.55723 0.005128
MED4_ARR_0312_at PMM0314 Photosystem II PsbT protein 2665 -2.55323 0.005128
MED4_ARR_0305_at PMM0307 hypothetical 2658 -2.48801 0.005128
MED4_ARR_1441_x_at PMM1451 ATP synthase F1, alpha subunit 4005 -2.45423 0.0
MED4_ARR_0781_x_at PMM0785 phosphoribulokinase 3216 -2.44556 0.005128
MED4_ARR_1568_at PMM1578 Photosystem I protein PsaD 4133 -2.42538 0.0
MED4_ARR_0451_x_at PMM0453 3-oxoacyl-[acyl-carrier protein] reductase 2846 -2.36571 0.061966
MED4_ARR_1476_x_at PMM1486 possible deoxyribonuclease, TatD family 4041 -2.32125 0.053922
MED4_ARR_0762_x_at PMM0766 Ribulose-phosphate 3-epimerase 3196 -2.31465 0.005128
MED4_ARR_0549_x_at PMM0552 carboxysome shell protein CsoS2 -2.29664 0.005128
MED4_ARR_1370_x_at PMM1379 putative dape gene and orf2 3909 -2.20576 0.053922

Upregulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_0977_at PMT0992 possible high light inducible protein 3918 6.62123 0.0
MIT9313_ARR_0976_x_at PMT0991 possible tRNA synthetases class I (E and Q) 4995 5.13615 0.0
MIT9313_ARR_0975_x_at PMT0990 possible high light inducible protein 3918 4.8403 0.0
MIT9313_ARR_0973_x_at PMT0988 hypothetical 3.77057 0.0
MIT9313_ARR_1138_x_at PMT1154 possible high light inducible protein 3919 3.70493 0.0
MIT9313_ARR_1137_x_at PMT1153 possible high light inducible protein 3634 3.54158 0.0
MIT9313_ARR_0936_x_at PMT0951 conserved hypothetical protein 2756 3.41378 0.0
MIT9313_ARR_2221_x_at PMT2239 Ferredoxin--nitrite reductase 5786 3.31701 0.0
MIT9313_ARR_2222_x_at PMT2240 Formate and nitrite transporters 5788 3.13402 0.0
MIT9313_ARR_1136_at PMT1152 possible high light inducible protein 5143 3.08836 0.0
MIT9313_ARR_0939_x_at PMT0954 conserved hypothetical protein 4935 3.05474 0.033508
MIT9313_ARR_1006_x_at PMT1021 possible Small cytokines (intecrine/chemokine) 3.03116 0.064823
MIT9313_ARR_0232_x_at PMT0236 possible Ser/Thr protein phosphatase 3.03053 0.071097
MIT9313_ARR_0949_x_at PMT0964 conserved hypothetical protein 2761 2.92855 0.0
MIT9313_ARR_1813_x_at PMT1831 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 2.91416 0.0
MIT9313_ARR_0188_x_at PMT0192 Glycoside hydrolase family 4381 2.89741 0.007246
MIT9313_ARR_0791_x_at PMT0805 two-component response regulator 4749 2.89687 0.0
MIT9313_ARR_0992_x_at PMT1007 hypothetical 5010 2.85064 0.0
MIT9313_ARR_2156_x_at PMT2174 Fatty acid desaturase, type 1 4227 2.73826 0.0
MIT9313_ARR_1128_x_at PMT1144 conserved hypothetical protein 5137 2.71245 0.0
MIT9313_ARR_0893_x_at PMT0908 Band 7 protein 2876 2.68758 0.0
MIT9313_ARR_0948_x_at PMT0963 hypothetical 2.68348 0.0
MIT9313_ARR_1928_x_at PMT1946 Phosphorylase 4156 2.59862 0.0
MIT9313_ARR_1579_x_at PMT1597 conserved hypothetical protein 2.53748 0.010376
MIT9313_ARR_0362_x_at PMT0369 DUF192 4516 2.43025 0.006221
MIT9313_ARR_0937_x_at PMT0952 possible Hemolysin-type calcium-binding protei 2.38344 0.015796
MIT9313_ARR_0123_x_at PMT0127 Type II alternative RNA polymerase sigma factor, sigma-70 family 4184 2.27276 0.0
MIT9313_ARR_1342_x_at PMT1359 putative Biotin--acetyl-CoA-carboxylase ligase 2825 2.26884 0.068855
MIT9313_ARR_0942_x_at PMT0957 conserved hypothetical protein 2.25931 0.0
MIT9313_ARR_1052_x_at PMT1068 Type II alternative RNA polymerase sigma factor, sigma-70 family 5092 2.24687 0.0
MIT9313_ARR_2039_x_at PMT2057 probable O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase) 2525 2.14068 0.08114
MIT9313_ARR_1590_x_at PMT1608 Uncharacterized protein conserved in bacteria 2422 2.0936 0.0
MIT9313_ARR_1835_x_at PMT1853 Ammonium transporter family 2613 2.0867 0.0
MIT9313_ARR_0978_x_at PMT0993 ABC transporter, substrate binding protein, phosphate 2.07651 0.0
MIT9313_ARR_0956_x_at PMT0971 possible bZIP transcription factor 2.04436 0.0
MIT9313_ARR_2211_x_at PMT2229 putative urea ABC transporter, substrate binding protein 3427 1.99899 0.0
MIT9313_ARR_1618_x_at PMT1636 possible serine protease 2440 1.9966 0.0
MIT9313_ARR_1856_x_at PMT1874 conserved hypothetical 5547 1.90802 0.0
MIT9313_ARR_1622_x_at PMT1640 possible high light inducible protein 1.90605 0.0
MIT9313_ARR_1547_x_at PMT1564 possible Phosphate-binding protein 3115 1.82349 0.0
MIT9313_ARR_0197_x_at PMT0201 conserved hypothetical protein 3675 1.82227 0.0
MIT9313_ARR_0865_x_at PMT0880 Staphylococcus nuclease (SNase) homologues 4823 1.81003 0.006221
MIT9313_RNA_0038_at 1.75154 0.0
MIT9313_ARR_1269_x_at PMT1286 possible Glycosyl hydrolases family 11 5198 1.71549 0.0
MIT9313_RNA_0002_at 1.70359 0.0
MIT9313_RNA_0027_at 1.69847 0.0
MIT9313_ARR_0499_x_at PMT0508 ABC transporter, substrate binding protein, phosphate 3129 1.67741 0.0
MIT9313_ARR_1038_x_at PMT1054 possible Ribosomal L29e protein family 5088 1.66501 0.0
MIT9313_ARR_0790_x_at PMT0804 two-component sensor histidine kinase 4748 1.66316 0.0
MIT9313_ARR_0556_x_at PMT0565 6-phosphogluconate dehydrogenase 3200 1.62241 0.0

Down-regulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_1462_x_at PMT1479 possible Extracellular link domain 5306 -5.53118 0.0
MIT9313_ARR_1557_x_at PMT1574 possible membrane permease or ABC transporter component -5.23387 0.0
MIT9313_ARR_0892_x_at PMT0907 possible Octicosapeptide repeat -5.18863 0.0
MIT9313_ARR_0477_x_at PMT0485 hypothetical 4583 -4.67582 0.0
MIT9313_ARR_1715_x_at PMT1733 50S ribosomal protein L4 4112 -4.48596 0.0
MIT9313_ARR_1719_x_at PMT1737 50S ribosomal protein L22 4108 -4.27681 0.0
MIT9313_ARR_1257_x_at PMT1273 Porphobilinogen deaminase 2889 -4.15474 0.0
MIT9313_ARR_0165_x_at PMT0169 possible Chitin synthase -4.1137 0.0
MIT9313_ARR_1556_x_at PMT1573 ABC-transporter component -4.09494 0.0
MIT9313_ARR_0091_x_at PMT0095 capsular polysaccharide biosynthesis protein 4313 -3.98617 0.012595
MIT9313_ARR_0245_x_at PMT0249 fatty acid desaturase, type 2 3914 -3.92542 0.0
MIT9313_ARR_1218_x_at PMT1234 conserved hypothetical protein 2923 -3.91997 0.0
MIT9313_ARR_0106_x_at PMT0110 conserved hypothetical protein -3.91623 0.0
MIT9313_ARR_0900_x_at PMT0915 Bacterial outer membrane protein -3.88133 0.0
MIT9313_ARR_0256_x_at PMT0260 hypothetical protein -3.85669 0.020501
MIT9313_ARR_0084_x_at PMT0088 possible protease -3.84441 0.0
MIT9313_ARR_1752_x_at PMT1770 Photosystem I PsaA protein 4079 -3.80491 0.0
MIT9313_ARR_0632_x_at PMT0642 Uncharacterized protein involved in formation of curli polymers 4678 -3.74599 0.0
MIT9313_ARR_1550_x_at PMT1567 conserved hypothetical protein 3897 -3.67676 0.0
MIT9313_ARR_0761_x_at PMT0774 Rieske iron-sulfur protein 2Fe-2S subunit 3239 -3.67199 0.0
MIT9313_ARR_1725_x_at PMT1743 50S ribosomal protein L24 4102 -3.64763 0.0
MIT9313_ARR_1751_x_at PMT1769 Photosystem I PsaB protein 4078 -3.63932 0.0
MIT9313_ARR_0476_x_at PMT0484 possible Domain of unknown function DUF33 4581 -3.61991 0.007246
MIT9313_ARR_0902_x_at PMT0917 Uncharacterized conserved protein 3683 -3.58725 0.0
MIT9313_ARR_1723_x_at PMT1741 30S Ribosomal protein S17 4104 -3.58524 0.0
MIT9313_ARR_1450_x_at PMT1467 ATP synthase F1, alpha subunit 4005 -3.58306 0.0
MIT9313_ARR_1555_x_at PMT1572 conserved hypothetical protein -3.54717 0.0
MIT9313_ARR_0500_x_at PMT0509 Cytochrome c, class IC:Cytochrome c, class I 4605 -3.53078 0.0
MIT9313_ARR_0675_x_at PMT0687 Photosystem I PsaK protein (subunit X) 3362 -3.52638 0.0
MIT9313_ARR_1160_x_at PMT1176 Acetolactate synthase small subunit 3659 -3.52539 0.0
MIT9313_ARR_1449_x_at PMT1466 ATP synthase gamma subunit 4004 -3.49432 0.0
MIT9313_ARR_0676_x_at PMT0688 conserved hypothetical protein 3361 -3.46327 0.006221
MIT9313_ARR_0974_x_at PMT0989 hypothetical 4779 -3.40017 0.0
MIT9313_ARR_1726_x_at PMT1744 50S ribosomal protein L5 4101 -3.25942 0.0
MIT9313_ARR_0842_x_at PMT0856 possible large-conductance mechanosensitive channel mscL 4800 -3.24702 0.0
MIT9313_ARR_0826_x_at PMT0840 hypothetical 4779 -3.2315 0.0
MIT9313_ARR_0103_x_at PMT0107 conserved hypothetical protein -3.23106 0.032009
MIT9313_ARR_2060_x_at PMT2078 hypothetical 5670 -3.20187 0.066778
MIT9313_ARR_0470_x_at PMT0478 conserved hypothetical protein 3838 -3.18641 0.017773
MIT9313_ARR_1530_x_at PMT1547 Delta-aminolevulinic acid dehydratase 2566 -3.17876 0.0
MIT9313_ARR_1030_x_at PMT1045 possible Glyceraldehyde 3-phosphate dehydrogenase 5078 -3.17158 0.0
MIT9313_ARR_0728_x_at PMT0740 30S Ribosomal protein S18 3324 -3.16881 0.0
MIT9313_ARR_0273_x_at PMT0277 conserved hypothetical 4455 -3.16145 0.010376
MIT9313_ARR_0901_x_at PMT0916 hypothetical 4868 -3.16021 0.0
MIT9313_ARR_1025_x_at PMT1040 possible Sema domain 5072 -3.14647 0.007246
MIT9313_ARR_1031_x_at PMT1046 light-harvesting complex protein 3022 -3.12796 0.0
MIT9313_ARR_1453_x_at PMT1470 ATP synthase B/B' CF(0) 4008 -3.119 0.0
MIT9313_ARR_0096_x_at PMT0100 imidazoleglycerol-phosphate synthase, cyclase subunit -3.11669 0.059837
MIT9313_ARR_0620_x_at PMT0630 possible Gonadotropin-releasing hormone 4670 -3.10088 0.027778
MIT9313_ARR_0623_x_at PMT0633 hypothetical 4672 -3.05275 0.010043