Browse Site Data
GenomesNitrogen Availability Experiment: Urea for log phase
Note:Report probesets with q<=0.05
Number of probesets to report in each category: up to 20
Report intergenic probesets: no See all experiments of Nitrogen Availability: Here
Upregulated Probesets in MED4
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MED4_ARR_1395_at | PMM1404 | possible high light inducible protein | 3919 | 1.59722 | 0.0 |
| MED4_ARR_0856_x_at | PMM0861 | possible Virion host shutoff protein | 3315 | 1.4795 | 0.0 |
| MED4_ARR_1112_at | PMM1118 | possible high light inducible protein | 3918 | 1.41758 | 0.0 |
| MED4_ARR_1375_at | PMM1384 | possible high light inducible protein | 3918 | 1.41621 | 0.0 |
| MED4_ARR_1396_x_at | PMM1405 | hypothetical | 3951 | 1.34516 | 0.0 |
| MED4_ARR_1129_x_at | PMM1135 | possible high light inducible protein | 3634 | 1.24435 | 0.0 |
| MED4_ARR_0346_x_at | PMM0348 | possible Spectrin repeat | 2711 | 1.17612 | 0.0 |
| MED4_ARR_1356_x_at | PMM1365 | possible MATH domain | 3880 | 1.09478 | 0.0 |
| MED4_ARR_1023_x_at | PMM1028 | conserved hypothetical | 3327 | 1.05873 | 0.0 |
| MED4_ARR_1112_s_at | PMM1118 | possible high light inducible protein | 3918 | 0.977073 | 0.0 |
| MED4_ARR_1391_x_at | PMM1400 | possible Hemagglutinin-neuraminidase | 3531 | 0.9583 | 0.0 |
| MED4_ARR_1376_at | PMM1385 | possible high light inducible protein | 3919 | 0.910689 | 0.0 |
| MED4_ARR_1388_x_at | PMM1397 | possible high light inducible protein | 3939 | 0.908316 | 0.0 |
| MED4_ARR_0977_x_at | PMM0982 | HNH endonuclease:HNH nuclease | 3443 | 0.905744 | 0.0217391 |
| MED4_ARR_0799_x_at | PMM0804 | ferritin | 3235 | 0.89904 | 0.0 |
| MED4_ARR_0812_x_at | PMM0817 | possible high light inducible protein | 3634 | 0.865716 | 0.0 |
| MED4_ARR_1381_at | PMM1390 | possible high light inducible protein | 3918 | 0.859794 | 0.0 |
| MED4_ARR_1387_at | PMM1396 | possible high light inducible protein | 3938 | 0.855208 | 0.0217391 |
| MED4_ARR_0813_s_at | PMM0818 | possible high light inducible protein | 3918 | 0.746933 | 0.0357143 |
| MED4_ARR_1274_x_at | PMM1283 | Integral membrane protein, interacts with FtsH | 3794 | 0.617655 | 0.0217391 |
Down-regulated Probesets in MED4
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MED4_ARR_1660_x_at | PMM1672 | Fatty acid desaturase, type 1 | 4227 | -2.55002 | 0.0 |
| MED4_ARR_1659_x_at | PMM1671 | conserved hypothetical protein | 4226 | -2.14914 | 0.0 |
| MED4_ARR_1658_x_at | PMM1670 | Cystathionine beta-lyase family protein involved in aluminum resistance | 4225 | -1.70966 | 0.0217391 |
| MED4_ARR_0494_x_at | PMM0496 | Putative principal RNA polymerase sigma factor | 2890 | -1.37961 | 0.0 |
| MED4_ARR_0365_x_at | PMM0367 | conserved hypothetical protein | 2739 | -1.15722 | 0.0357143 |
| MED4_ARR_0442_x_at | PMM0444 | Cytochrome c oxidase, subunit III | 2836 | -1.01749 | 0.0357143 |
| MED4_ARR_1446_x_at | PMM1456 | ATP synthase A subunit | 4010 | -0.845954 | 0.0 |
| MED4_ARR_0801_x_at | PMM0806 | Bacterial regulatory proteins, Crp family | 3237 | -0.827142 | 0.0 |
| MED4_RNA_0025_at | -0.784516 | 0.0357143 | |||
| MED4_RNA_0020_at | -0.751072 | 0.0 | |||
| MED4_ARR_0472_at | PMM0474 | Conserved hypothetical protein | 2867 | -0.744225 | 0.0217391 |
| MED4_ARR_0408_x_at | PMM0410 | 30S ribosomal protein S4 | 2798 | -0.726707 | 0.0217391 |
| MED4_ARR_0141_x_at | PMM0142 | RNA-binding region RNP-1 (RNA recognition motif) | 2493 | -0.720125 | 0.0217391 |
| MED4_ARR_1006_at | PMM1011 | hypothetical | 3485 | -0.716898 | 0.0217391 |
| MED4_ARR_1447_x_at | PMM1457 | possible ATP synthase subunit 1 | 4011 | -0.664719 | 0.0217391 |
| MED4_ARR_0467_x_at | PMM0469 | Photosystem I PsaF protein (subunit III) | 2862 | -0.525923 | 0.0357143 |
Upregulated Probesets in MIT9313
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MIT9313_ARR_0975_x_at | PMT0990 | possible high light inducible protein | 3918 | 7.14642 | 0.0 |
| MIT9313_ARR_0977_at | PMT0992 | possible high light inducible protein | 3918 | 6.5359 | 0.0 |
| MIT9313_ARR_2222_x_at | PMT2240 | Formate and nitrite transporters | 5788 | 5.99329 | 0.0 |
| MIT9313_ARR_0976_x_at | PMT0991 | possible tRNA synthetases class I (E and Q) | 4995 | 5.93824 | 0.0 |
| MIT9313_ARR_2223_x_at | PMT2241 | possible Homeobox domain | 5789 | 4.06805 | 0.0 |
| MIT9313_ARR_2221_x_at | PMT2239 | Ferredoxin--nitrite reductase | 5786 | 3.75529 | 0.0 |
| MIT9313_ARR_2211_x_at | PMT2229 | putative urea ABC transporter, substrate binding protein | 3427 | 3.1961 | 0.0 |
| MIT9313_ARR_1136_at | PMT1152 | possible high light inducible protein | 5143 | 3.00864 | 0.0 |
| MIT9313_ARR_1273_x_at | PMT1290 | conserved hypothetical protein | 2882 | 2.78933 | 0.0 |
| MIT9313_ARR_1137_x_at | PMT1153 | possible high light inducible protein | 3634 | 2.76594 | 0.0 |
| MIT9313_ARR_1138_x_at | PMT1154 | possible high light inducible protein | 3919 | 2.66297 | 0.0 |
| MIT9313_ARR_2186_x_at | PMT2204 | conserved hypothetical protein | 5767 | 2.28757 | 0.0 |
| MIT9313_ARR_1187_x_at | PMT1203 | carboxysome shell protein CsoS2 | 5164 | 2.13274 | 0.0 |
| MIT9313_ARR_1188_x_at | PMT1204 | Ribulose bisphosphate carboxylase, small chain | 2945 | 2.07706 | 0.0177515 |
| MIT9313_ARR_2210_x_at | PMT2228 | putative urea ABC transporter | 3428 | 2.03371 | 0.0 |
| MIT9313_ARR_2209_x_at | PMT2227 | Putative membrane protein of ABC transport system | 3429 | 1.89021 | 0.0 |
| MIT9313_ARR_0093_x_at | PMT0097 | conserved hypothetical protein | 2833 | 1.84332 | 0.0431034 |
| MIT9313_ARR_2184_x_at | PMT2202 | ABC transporter, ATP binding domain, possibly Mn transport | 3519 | 1.78996 | 0.0 |
| MIT9313_ARR_0280_x_at | PMT0284 | possible porin | 4464 | 1.75606 | 0.0 |
| MIT9313_ARR_0480_at | PMT0488 | possible Integrase Zinc binding domain | 6233 | 1.69905 | 0.0 |
Down-regulated Probesets in MIT9313
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MIT9313_ARR_1555_x_at | PMT1572 | conserved hypothetical protein | 5379 | -4.26897 | 0.0 |
| MIT9313_ARR_1554_x_at | PMT1571 | hypothetical | 5378 | -3.79053 | 0.0 |
| MIT9313_ARR_2120_x_at | PMT2138 | conserved hypothetical protein | 5723 | -3.78196 | 0.0 |
| MIT9313_ARR_1556_x_at | PMT1573 | ABC-transporter component | 3178 | -3.72318 | 0.0 |
| MIT9313_ARR_0116_x_at | PMT0120 | tRNA delta-2-isopentenylpyrophosphate (IPP) transferase | 4190 | -3.26689 | 0.0431034 |
| MIT9313_ARR_0165_x_at | PMT0169 | possible Chitin synthase | 4364 | -3.00122 | 0.0 |
| MIT9313_ARR_1559_x_at | PMT1576 | ABC transporter, ATP binding protein | 3180 | -2.4725 | 0.0 |
| MIT9313_ARR_2099_x_at | PMT2117 | possible D12 class N6 adenine-specific DNA met | 5696 | -2.37051 | 0.0 |
| MIT9313_RNA_0016_at | -2.35461 | 0.0 | |||
| MIT9313_ARR_1557_x_at | PMT1574 | possible membrane permease or ABC transporter component | 3179 | -2.34349 | 0.0 |
| MIT9313_ARR_0909_x_at | PMT0924 | possible Carbamoyl-phosphate synthase L chain | 4506 | -2.29418 | 0.0 |
| MIT9313_ARR_0900_x_at | PMT0915 | Bacterial outer membrane protein | 6113 | -2.17139 | 0.0 |
| MIT9313_ARR_0323_x_at | PMT0328 | possible bromodomain adjacent to zinc finger domain, 2B... | 4504 | -2.1505 | 0.0 |
| MIT9313_ARR_0901_x_at | PMT0916 | hypothetical | 4868 | -2.1135 | 0.0 |
| MIT9313_ARR_1922_x_at | PMT1940 | possible Peptidase family C9 | 5595 | -2.05046 | 0.0 |
| MIT9313_ARR_1208_x_at | PMT1224 | Biotin/lipoate A/B protein ligase family | 2933 | -2.01011 | 0.0 |
| MIT9313_ARR_0164_x_at | PMT0168 | possible Negative factor, (F-Protein) or Nef. | 4363 | -1.94978 | 0.0 |
| MIT9313_ARR_1923_x_at | PMT1941 | hypothetical protein | 5596 | -1.93679 | 0.0 |
| MIT9313_ARR_0928_x_at | PMT0943 | hypothetical protein | 4914 | -1.92253 | 0.0 |
| MIT9313_ARR_1553_x_at | PMT1570 | conserved hypothetical protein | 5377 | -1.9225 | 0.0 |