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Nitrogen Availability Experiment: Urea for log phase
Note:
Report probesets with q<=0.1
Number of probesets to report in each category: up to 50
Report intergenic probesets: no

See all experiments of Nitrogen Availability: Here

Upregulated Probesets in MED4

ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_1395_at PMM1404 possible high light inducible protein 3919 1.59722 0.0
MED4_ARR_0856_x_at PMM0861 possible Virion host shutoff protein 3315 1.4795 0.0
MED4_ARR_1112_at PMM1118 possible high light inducible protein 1.41758 0.0
MED4_ARR_1375_at PMM1384 possible high light inducible protein 3918 1.41621 0.0
MED4_ARR_1396_x_at PMM1405 hypothetical 1.34516 0.0
MED4_ARR_1129_x_at PMM1135 possible high light inducible protein 3634 1.24435 0.0
MED4_ARR_0346_x_at PMM0348 possible Spectrin repeat 2711 1.17612 0.0
MED4_ARR_1356_x_at PMM1365 possible MATH domain 3880 1.09478 0.0
MED4_ARR_1023_x_at PMM1028 conserved hypothetical 3327 1.05873 0.0
MED4_ARR_1112_s_at PMM1118 possible high light inducible protein 0.977073 0.0
MED4_ARR_1391_x_at PMM1400 possible Hemagglutinin-neuraminidase 3531 0.9583 0.0
MED4_ARR_1376_at PMM1385 possible high light inducible protein 3919 0.910689 0.0
MED4_ARR_1388_x_at PMM1397 possible high light inducible protein 3939 0.908316 0.0
MED4_ARR_0977_x_at PMM0982 HNH endonuclease:HNH nuclease 3443 0.905744 0.021739
MED4_ARR_0799_x_at PMM0804 ferritin 3235 0.89904 0.0
MED4_ARR_0812_x_at PMM0817 possible high light inducible protein 0.865716 0.0
MED4_ARR_1381_at PMM1390 possible high light inducible protein 3918 0.859794 0.0
MED4_ARR_1387_at PMM1396 possible high light inducible protein 3938 0.855208 0.021739
MED4_ARR_0805_x_at PMM0810 hypothetical 3242 0.74731 0.067797
MED4_ARR_0813_s_at PMM0818 possible high light inducible protein 0.746933 0.035714
MED4_ARR_1061_x_at PMM1066 2-isopropylmalate synthase 3557 0.630724 0.09589
MED4_ARR_1274_x_at PMM1283 Integral membrane protein, interacts with FtsH 3794 0.617655 0.021739
MED4_ARR_0896_x_at PMM0901 heat shock protein HtpG 3357 0.574715 0.09589

Down-regulated Probesets in MED4
ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_1660_x_at PMM1672 Fatty acid desaturase, type 1 4227 -2.55002 0.0
MED4_ARR_1659_x_at PMM1671 conserved hypothetical protein 4226 -2.14914 0.0
MED4_ARR_1658_x_at PMM1670 Cystathionine beta-lyase family protein involved in aluminum resistance 4225 -1.70966 0.021739
MED4_ARR_0494_x_at PMM0496 Putative principal RNA polymerase sigma factor 2890 -1.37961 0.0
MED4_ARR_0225_x_at PMM0227 ATP-sulfurylase 2577 -1.19287 0.080645
MED4_ARR_0365_x_at PMM0367 conserved hypothetical protein 2739 -1.15722 0.035714
MED4_ARR_0442_x_at PMM0444 Cytochrome c oxidase, subunit III 2836 -1.01749 0.035714
MED4_ARR_1446_x_at PMM1456 ATP synthase A subunit 4010 -0.845954 0.0
MED4_ARR_0801_x_at PMM0806 Bacterial regulatory proteins, Crp family 3237 -0.827142 0.0
MED4_ARR_1452_x_at PMM1462 conserved hypothetical protein 4016 -0.799805 0.080645
MED4_RNA_0025_at -0.784516 0.035714
MED4_ARR_0415_x_at PMM0417 hypothetical 2806 -0.766231 0.067797
MED4_RNA_0020_at -0.751072 0.0
MED4_ARR_0472_at PMM0474 Conserved hypothetical protein 2867 -0.744225 0.021739
MED4_ARR_0408_x_at PMM0410 30S ribosomal protein S4 2798 -0.726707 0.021739
MED4_ARR_0141_x_at PMM0142 RNA-binding region RNP-1 (RNA recognition motif) 2493 -0.720125 0.021739
MED4_ARR_1006_at PMM1011 hypothetical 3485 -0.716898 0.021739
MED4_ARR_1447_x_at PMM1457 possible ATP synthase subunit 1 4011 -0.664719 0.021739
MED4_ARR_0226_x_at PMM0228 Photosystem II manganese-stabilizing protein 2578 -0.598794 0.09375
MED4_ARR_0467_x_at PMM0469 Photosystem I PsaF protein (subunit III) 2862 -0.525923 0.035714

Upregulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_0975_x_at PMT0990 possible high light inducible protein 3918 7.14642 0.0
MIT9313_ARR_0977_at PMT0992 possible high light inducible protein 3918 6.5359 0.0
MIT9313_ARR_2222_x_at PMT2240 Formate and nitrite transporters 5788 5.99329 0.0
MIT9313_ARR_0976_x_at PMT0991 possible tRNA synthetases class I (E and Q) 4995 5.93824 0.0
MIT9313_ARR_2223_x_at PMT2241 possible Homeobox domain 5789 4.06805 0.0
MIT9313_ARR_2221_x_at PMT2239 Ferredoxin--nitrite reductase 5786 3.75529 0.0
MIT9313_ARR_2211_x_at PMT2229 putative urea ABC transporter, substrate binding protein 3427 3.1961 0.0
MIT9313_ARR_1136_at PMT1152 possible high light inducible protein 5143 3.00864 0.0
MIT9313_ARR_1273_x_at PMT1290 conserved hypothetical protein 2882 2.78933 0.0
MIT9313_ARR_1137_x_at PMT1153 possible high light inducible protein 3634 2.76594 0.0
MIT9313_ARR_1138_x_at PMT1154 possible high light inducible protein 3919 2.66297 0.0
MIT9313_ARR_2186_x_at PMT2204 conserved hypothetical protein 5767 2.28757 0.0
MIT9313_ARR_1187_x_at PMT1203 carboxysome shell protein CsoS2 5164 2.13274 0.0
MIT9313_ARR_1188_x_at PMT1204 Ribulose bisphosphate carboxylase, small chain 2945 2.07706 0.017752
MIT9313_ARR_2210_x_at PMT2228 putative urea ABC transporter 3428 2.03371 0.0
MIT9313_ARR_2209_x_at PMT2227 Putative membrane protein of ABC transport system 3429 1.89021 0.0
MIT9313_ARR_0093_x_at PMT0097 conserved hypothetical protein 1.84332 0.043103
MIT9313_ARR_2184_x_at PMT2202 ABC transporter, ATP binding domain, possibly Mn transport 3519 1.78996 0.0
MIT9313_ARR_0280_x_at PMT0284 possible porin 4464 1.75606 0.0
MIT9313_ARR_0480_at PMT0488 possible Integrase Zinc binding domain 1.69905 0.0
MIT9313_ARR_2156_x_at PMT2174 Fatty acid desaturase, type 1 4227 1.55275 0.007576
MIT9313_ARR_0488_x_at PMT0496 light-harvesting complex protein 3022 1.54812 0.0
MIT9313_ARR_2208_x_at PMT2226 Putative ATP-binding subunit of urea ABC transport system 3430 1.52657 0.0
MIT9313_ARR_1537_x_at PMT1554 Pentapeptide repeats 3207 1.51942 0.035242
MIT9313_ARR_1186_x_at PMT1202 carboxysome shell protein CsoS3 2947 1.51355 0.022472
MIT9313_ARR_1032_x_at PMT1047 possible Trypsin and protease inhibitor 5083 1.50578 0.0
MIT9313_ARR_0936_x_at PMT0951 conserved hypothetical protein 2756 1.43626 0.0
MIT9313_ARR_0256_x_at PMT0260 hypothetical protein 1.41707 0.074434
MIT9313_ARR_2183_x_at PMT2201 ABC transporter component, possibly Mn transport 3517 1.39521 0.0
MIT9313_ARR_0281_x_at PMT0285 possible Peptidase family M20/M25/M40 4465 1.3768 0.0
MIT9313_ARR_0257_x_at PMT0261 hypothetical protein 4443 1.37428 0.026882
MIT9313_ARR_1367_x_at PMT1384 hypothetical 5249 1.32843 0.022472
MIT9313_ARR_1189_x_at PMT1205 Ribulose bisphosphate carboxylase, large chain 2944 1.30516 0.017752
MIT9313_ARR_0950_x_at PMT0965 conserved hypothetical protein 4953 1.26831 0.074434
MIT9313_ARR_0421_x_at PMT0428 Phosphofructokinase:Peptidase family M3 2987 1.26825 0.017752
MIT9313_ARR_0213_x_at PMT0217 possible potassium channel, VIC family 4395 1.2491 0.073579
MIT9313_ARR_1037_x_at PMT1053 DUF187 5087 1.23591 0.073579
MIT9313_ARR_0420_x_at PMT0427 putative NADH Dehydrogenase (complex I) subunit (chain 4) 2988 1.22818 0.0
MIT9313_ARR_1640_x_at PMT1658 possible Ribosomal protein S14p/S29e 5447 1.21978 0.026882
MIT9313_ARR_0092_x_at PMT0096 capsular polysaccharide biosynthesis protein 1.21806 0.073579
MIT9313_ARR_0951_x_at PMT0966 conserved hypothetical protein 4954 1.19845 0.029268
MIT9313_ARR_0089_x_at PMT0093 multidrug efflux family ABC transporter 1.19111 0.073579
MIT9313_ARR_0283_x_at PMT0287 putative iron ABC transporter, substrate binding protein 3673 1.17912 0.0
MIT9313_ARR_0087_x_at PMT0091 conserved hypothetical protein 1.16822 0.017752
MIT9313_ARR_1622_x_at PMT1640 possible high light inducible protein 1.14034 0.0
MIT9313_ARR_0924_x_at PMT0939 hypothetical protein 3139 1.12201 0.082067
MIT9313_ARR_0258_x_at PMT0262 possible pilin 4444 1.11669 0.017752
MIT9313_ARR_1412_x_at PMT1429 2Fe-2S Ferredoxin:Ferredoxin 3865 1.07456 0.035242
MIT9313_ARR_0090_x_at PMT0094 possible transporter for efflux 1.06962 0.055777
MIT9313_ARR_1449_x_at PMT1466 ATP synthase gamma subunit 4004 1.03154 0.035242

Down-regulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_1555_x_at PMT1572 conserved hypothetical protein -4.26897 0.0
MIT9313_ARR_1554_x_at PMT1571 hypothetical -3.79053 0.0
MIT9313_ARR_2120_x_at PMT2138 conserved hypothetical protein -3.78196 0.0
MIT9313_ARR_1556_x_at PMT1573 ABC-transporter component -3.72318 0.0
MIT9313_ARR_0116_x_at PMT0120 tRNA delta-2-isopentenylpyrophosphate (IPP) transferase 4190 -3.26689 0.043103
MIT9313_ARR_0165_x_at PMT0169 possible Chitin synthase -3.00122 0.0
MIT9313_ARR_1559_x_at PMT1576 ABC transporter, ATP binding protein -2.4725 0.0
MIT9313_ARR_2099_x_at PMT2117 possible D12 class N6 adenine-specific DNA met 5696 -2.37051 0.0
MIT9313_RNA_0016_at -2.35461 0.0
MIT9313_ARR_1557_x_at PMT1574 possible membrane permease or ABC transporter component -2.34349 0.0
MIT9313_ARR_0909_x_at PMT0924 possible Carbamoyl-phosphate synthase L chain 4506 -2.29418 0.0
MIT9313_ARR_0900_x_at PMT0915 Bacterial outer membrane protein -2.17139 0.0
MIT9313_ARR_0323_x_at PMT0328 possible bromodomain adjacent to zinc finger domain, 2B... -2.1505 0.0
MIT9313_ARR_0901_x_at PMT0916 hypothetical 4868 -2.1135 0.0
MIT9313_ARR_1922_x_at PMT1940 possible Peptidase family C9 -2.05046 0.0
MIT9313_ARR_1208_x_at PMT1224 Biotin/lipoate A/B protein ligase family 2933 -2.01011 0.0
MIT9313_ARR_0164_x_at PMT0168 possible Negative factor, (F-Protein) or Nef. -1.94978 0.0
MIT9313_ARR_1923_x_at PMT1941 hypothetical protein -1.93679 0.0
MIT9313_ARR_0928_x_at PMT0943 hypothetical protein -1.92253 0.0
MIT9313_ARR_1553_x_at PMT1570 conserved hypothetical protein -1.9225 0.0
MIT9313_ARR_1560_x_at PMT1577 hypothetical protein -1.75591 0.0
MIT9313_RNA_0013_s_at -1.70737 0.0
MIT9313_ARR_0908_x_at PMT0923 hypothetical -1.67149 0.0
MIT9313_ARR_0892_x_at PMT0907 possible Octicosapeptide repeat -1.65303 0.0
MIT9313_ARR_1372_x_at PMT1389 hypothetical protein -1.6295 0.073579
MIT9313_ARR_1464_x_at PMT1481 Nitrogen regulatory protein P-II 4017 -1.6194 0.0
MIT9313_ARR_1203_x_at PMT1219 conserved hypothetical protein 2935 -1.55272 0.0
MIT9313_RNA_0023_at -1.50548 0.046025
MIT9313_ARR_1207_x_at PMT1223 hypothetical -1.45856 0.0
MIT9313_ARR_2133_x_at PMT2151 Bacterial regulatory proteins, GntR family:Cyclic nucleotide-... 5734 -1.45757 0.014925
MIT9313_RNA_0037_at -1.42058 0.035242
MIT9313_RNA_0043_x_at -1.39044 0.017752
MIT9313_ARR_0530_x_at PMT0539 phosphoribosylformylglycinamidine synthase 3211 -1.35394 0.0
MIT9313_RNA_0044_at -1.34391 0.017752
MIT9313_RNA_0043_at -1.3341 0.0
MIT9313_RNA_0019_at -1.33205 0.066915
MIT9313_ARR_2162_x_at PMT2180 conserved hypothetical 5753 -1.33156 0.0
MIT9313_RNA_0036_at -1.32448 0.043103
MIT9313_ARR_1497_x_at PMT1514 possible Neuromedin U 5321 -1.32315 0.007576
MIT9313_ARR_0859_x_at PMT0874 conserved hypothetical protein 3036 -1.30306 0.0
MIT9313_ARR_1762_x_at PMT1780 30S ribosomal protein S7 4065 -1.28682 0.0
MIT9313_ARR_0495_x_at PMT0503 possible ATLS1-like light-inducible protein 3676 -1.28126 0.017752
MIT9313_RNA_0038_at -1.27369 0.017752
MIT9313_RNA_0014_at -1.26833 0.054167
MIT9313_ARR_0718_x_at PMT0730 conserved hypothetical 3332 -1.25315 0.0
MIT9313_ARR_0709_x_at PMT0721 Conserved hypothetical protein 4711 -1.2183 0.0
MIT9313_ARR_0574_x_at PMT0583 putative Elongation factor Ts, EF-Ts 3184 -1.21541 0.0
MIT9313_RNA_0024_at -1.21496 0.026882
MIT9313_ARR_1463_x_at PMT1480 conserved hypothetical protein 4016 -1.20876 0.017752
MIT9313_ARR_0038_x_at PMT0038 possible Penicillin amidase 2376 -1.20807 0.0