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Nitrogen Availability Experiment: N deprivation for 6 h
Note:
Report probesets with q<=0.1
Number of probesets to report in each category: up to 50
Report intergenic probesets: no

See all experiments of Nitrogen Availability: Here

Upregulated Probesets in MED4

ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_0953_x_at PMM0958 conserved hypothetical 3415 6.01862 0.0
MED4_ARR_0368_x_at PMM0370 putative cyanate ABC transporter, substrate binding protein 2748 5.72849 0.0
MED4_ARR_1452_x_at PMM1462 conserved hypothetical protein 4016 5.61782 0.0
MED4_ARR_0965_x_at PMM0970 putative urea ABC transporter, substrate binding protein 3427 5.37088 0.0
MED4_ARR_0915_x_at PMM0920 Glutamine synthetase, glutamate--ammonia ligase 3376 5.06051 0.0
MED4_ARR_0244_x_at PMM0246 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 4.45086 0.0
MED4_ARR_0683_x_at PMM0687 conserved hypothetical 3.85155 0.0
MED4_ARR_0372_at PMM0374 mttA/Hcf106 family 3.74935 0.0
MED4_ARR_1036_x_at PMM1041 conserved hypothetical protein 3531 3.49777 0.0
MED4_ARR_0334_x_at PMM0336 conserved hypothetical 2691 3.47154 0.0
MED4_ARR_1453_x_at PMM1463 Nitrogen regulatory protein P-II 4017 2.85561 0.0
MED4_ARR_1381_at PMM1390 possible high light inducible protein 3918 2.62849 0.0
MED4_ARR_1032_x_at PMM1037 conserved hypothetical 3527 2.58773 0.005025
MED4_ARR_0357_at PMM0359 hypothetical 2728 2.56258 0.0
MED4_ARR_0335_x_at PMM0337 conserved hypothetical protein 2693 2.44307 0.0
MED4_ARR_0966_x_at PMM0971 putative urea ABC transporter 3428 2.33635 0.0
MED4_ARR_0369_x_at PMM0371 putative cyanate ABC transporter 2749 2.2811 0.0
MED4_ARR_1069_x_at PMM1074 Glucose-6-phosphate dehydrogenase 3565 2.25315 0.0
MED4_ARR_0363_x_at PMM0365 possible DsrE-like protein 2737 2.15865 0.0
MED4_ARR_0723_x_at PMM0727 Serine/threonine specific protein phosphatase 3149 1.90887 0.009091
MED4_ARR_0960_x_at PMM0965 Urease gamma subunit 3422 1.9055 0.0
MED4_ARR_0805_x_at PMM0810 hypothetical 3242 1.84513 0.0
MED4_ARR_0445_x_at PMM0447 Uncharacterized protein required for cytochrome oxidase assembly 2839 1.81441 0.0
MED4_ARR_0727_x_at PMM0731 possible COMC family 3153 1.75784 0.022059
MED4_ARR_0516_x_at PMM0519 Transaldolase 2913 1.70472 0.005025
MED4_ARR_0799_x_at PMM0804 ferritin 3235 1.68263 0.005025
MED4_ARR_0657_x_at PMM0660 possible RNA recognition motif. 3061 1.67848 0.0
MED4_ARR_1590_x_at PMM1601 phosphorylase 4156 1.67455 0.0
MED4_ARR_0903_x_at PMM0908 threonine dehydratase 3364 1.67069 0.005025
MED4_ARR_1033_x_at PMM1038 Uncharacterized conserved protein 3528 1.63706 0.022059
MED4_ARR_1073_x_at PMM1078 conserved hypothetical 3569 1.61382 0.009091
MED4_ARR_0366_x_at PMM0368 conserved hypothetical protein 2740 1.59079 0.005025
MED4_ARR_1611_x_at PMM1623 single-stranded DNA-binding protein 4178 1.55991 0.0
MED4_ARR_0362_x_at PMM0364 possible Malic enzyme 1.55256 0.0
MED4_ARR_1304_x_at PMM1313 Clp protease proteolytic subunit 3825 1.55029 0.005025
MED4_ARR_0446_x_at PMM0448 putative protoheme IX farnesyltransferase 2840 1.5445 0.005025
MED4_ARR_0541_x_at PMM0544 Light-independent protochlorophyllide reductase subunit B 2938 1.53516 0.005025
MED4_ARR_1584_x_at PMM1595 conserved hypothetical protein 4150 1.53433 0.005025
MED4_ARR_0370_x_at PMM0372 putative cyanate ABC transporter 2750 1.5313 0.005025
MED4_ARR_0444_x_at PMM0446 putative cytochrome c oxidase, subunit 2 2838 1.53019 0.005025
MED4_ARR_1419_x_at PMM1429 conserved hypothetical protein 3982 1.51891 0.005025
MED4_ARR_1280_x_at PMM1289 Type II alternative RNA polymerase sigma factor, sigma-70 family 3800 1.51637 0.005025
MED4_ARR_0430_at PMM0432 conserved hypothetical protein 2824 1.50643 0.005025
MED4_ARR_1403_x_at PMM1412 conserved hypothetical protein 3630 1.50562 0.005025
MED4_ARR_1687_x_at PMM1700 Aconitate hydratase B 4256 1.50225 0.0
MED4_ARR_1382_x_at PMM1391 possible Helix-turn-helix protein, copG family 1.49551 0.05988
MED4_ARR_1655_x_at PMM1667 conserved hypothetical protein 4222 1.48631 0.005025
MED4_ARR_0074_x_at PMM0075 Uncharacterized protein conserved in bacteria 2422 1.47884 0.0
MED4_ARR_0686_at PMM0690 possible high light inducible protein 1.45885 0.005025
MED4_ARR_1143_x_at PMM1149 conserved hypothetical 3652 1.44085 0.005025

Down-regulated Probesets in MED4
ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_0547_x_at PMM0550 Ribulose bisphosphate carboxylase, large chain 2944 -3.23622 0.0
MED4_ARR_1442_x_at PMM1452 ATP synthase, delta (OSCP) subunit 4006 -3.10923 0.0
MED4_ARR_1443_x_at PMM1453 ATP synthase B/B' CF(0) 4007 -2.97457 0.0
MED4_ARR_1547_x_at PMM1557 50S ribosomal protein L4 4112 -2.83286 0.0
MED4_ARR_1440_x_at PMM1450 ATP synthase gamma subunit 4004 -2.79542 0.0
MED4_ARR_0548_x_at PMM0551 Ribulose bisphosphate carboxylase, small chain 2945 -2.61319 0.0
MED4_ARR_1441_x_at PMM1451 ATP synthase F1, alpha subunit 4005 -2.51596 0.0
MED4_ARR_1548_x_at PMM1558 50S ribosomal protein L3 4113 -2.51524 0.0
MED4_ARR_1531_x_at PMM1541 50S ribosomal protein L15 4096 -2.49677 0.0
MED4_ARR_1530_x_at PMM1540 preprotein translocase SecY subunit 4095 -2.41652 0.0
MED4_ARR_1444_x_at PMM1454 ATP synthase B/B' CF(0) 4008 -2.38204 0.0
MED4_ARR_0549_x_at PMM0552 carboxysome shell protein CsoS2 -2.22679 0.0
MED4_ARR_1445_x_at PMM1455 ATP synthase subunit c 4009 -2.19507 0.0
MED4_ARR_1288_x_at PMM1297 Indole-3-glycerol phosphate synthase 3808 -2.19242 0.005025
MED4_ARR_0041_x_at PMM0041 possible reductase 2386 -2.17519 0.0
MED4_ARR_1544_x_at PMM1554 30S Ribosomal protein S19 4109 -2.10729 0.0
MED4_ARR_0670_x_at PMM0673 Putative phosphonate binding protein for ABC transporter 3074 -2.10018 0.005025
MED4_ARR_1543_x_at PMM1553 50S ribosomal protein L22 4108 -2.07854 0.0
MED4_ARR_0546_x_at PMM0549 carboxysome shell protein CsoS1 2943 -2.06491 0.0
MED4_ARR_1447_x_at PMM1457 possible ATP synthase subunit 1 4011 -2.05593 0.0
MED4_ARR_1541_x_at PMM1551 50S ribosomal protein L16 4106 -2.00738 0.0
MED4_ARR_1540_x_at PMM1550 50S ribosomal protein L29 4105 -2.00393 0.0
MED4_ARR_1545_x_at PMM1555 50S ribosomal protein L2 4110 -1.92372 0.0
MED4_ARR_1289_x_at PMM1298 putative dihydrolipoamide dehydrogenase 3809 -1.90564 0.0
MED4_ARR_1546_x_at PMM1556 50S ribosomal protein L23 4111 -1.88892 0.0
MED4_ARR_1446_x_at PMM1456 ATP synthase A subunit 4010 -1.87356 0.0
MED4_ARR_1535_x_at PMM1545 30S ribosomal protein S8 4100 -1.84447 0.0
MED4_ARR_1539_x_at PMM1549 30S Ribosomal protein S17 4104 -1.81735 0.0
MED4_ARR_1599_x_at PMM1610 Transketolase 4165 -1.76613 0.0
MED4_ARR_1327_x_at PMM1336 Putative (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase 3849 -1.76431 0.0
MED4_ARR_1532_x_at PMM1542 30S ribosomal protein S5 4097 -1.7161 0.0
MED4_ARR_1529_x_at PMM1539 Adenylate kinase 4094 -1.7126 0.022059
MED4_ARR_0824_x_at PMM0829 Triosephosphate isomerase 3268 -1.69152 0.005025
MED4_ARR_1538_x_at PMM1548 50S Ribosomal protein L14 4103 -1.68185 0.0
MED4_ARR_1542_x_at PMM1552 30S ribosomal protein S3 4107 -1.67748 0.0
MED4_ARR_0580_x_at PMM0583 Uroporphyrinogen decarboxylase (URO-D) 2977 -1.60475 0.0
MED4_ARR_0492_x_at PMM0494 putative inorganic pyrophosphatase 2888 -1.5564 0.005025
MED4_ARR_1326_x_at PMM1335 UDP-N-acetylglucosamine acyltransferase 3848 -1.50846 0.03169
MED4_ARR_1065_x_at PMM1070 Polyprenyl synthetase 3561 -1.48612 0.005025
MED4_ARR_1598_x_at PMM1609 3-oxoacyl-[acyl-carrier-protein] synthase II 4164 -1.48483 0.0
MED4_ARR_0133_x_at PMM0134 two-component response regulator 2485 -1.48361 0.005025
MED4_ARR_1537_at PMM1547 50S ribosomal protein L24 4102 -1.47348 0.005025
MED4_ARR_1497_x_at PMM1507 30S ribosomal protein S10 4062 -1.47249 0.005025
MED4_ARR_0750_x_at PMM0754 putative Elongation factor Ts 3184 -1.43814 0.005025
MED4_ARR_1472_at PMM1482 possible high light inducible protein 4037 -1.42834 0.005025
MED4_ARR_0737_x_at PMM0741 conserved hypothetical protein 3171 -1.41592 0.005025
MED4_ARR_0023_x_at PMM0023 Glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating) 2367 -1.41314 0.005025
MED4_ARR_0060_x_at PMM0060 acetyl-CoA carboxylase, biotin carboxylase subunit 2407 -1.40051 0.005025
MED4_ARR_1652_x_at PMM1664 thiamin biosynthesis protein 4219 -1.3915 0.087302
MED4_ARR_1500_x_at PMM1510 30S ribosomal protein S7 4065 -1.38841 0.005025

Upregulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_0975_x_at PMT0990 possible high light inducible protein 3918 4.53815 0.0
MIT9313_ARR_2221_x_at PMT2239 Ferredoxin--nitrite reductase 5786 4.33411 0.0
MIT9313_ARR_2222_x_at PMT2240 Formate and nitrite transporters 5788 3.57382 0.0
MIT9313_ARR_0976_x_at PMT0991 possible tRNA synthetases class I (E and Q) 4995 3.3424 0.0
MIT9313_ARR_2211_x_at PMT2229 putative urea ABC transporter, substrate binding protein 3427 3.24241 0.0
MIT9313_ARR_0977_at PMT0992 possible high light inducible protein 3918 3.1329 0.0
MIT9313_ARR_1813_x_at PMT1831 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 3.03245 0.0
MIT9313_ARR_2223_x_at PMT2241 possible Homeobox domain 5789 2.52624 0.0
MIT9313_ARR_0924_x_at PMT0939 hypothetical protein 3139 2.48419 0.0
MIT9313_ARR_1835_x_at PMT1853 Ammonium transporter family 2613 2.19274 0.0
MIT9313_ARR_2010_x_at PMT2028 Translation initiation factor SUI1 2516 2.00307 0.042394
MIT9313_ARR_0592_x_at PMT0601 Glutamine synthetase, glutamate--ammonia ligase 3376 1.72452 0.0
MIT9313_ARR_2210_x_at PMT2228 putative urea ABC transporter 3428 1.60479 0.0
MIT9313_RNA_0016_at 1.52083 0.042394
MIT9313_ARR_1187_x_at PMT1203 carboxysome shell protein CsoS2 5164 1.5031 0.0
MIT9313_ARR_0936_x_at PMT0951 conserved hypothetical protein 2756 1.49266 0.0
MIT9313_ARR_2156_x_at PMT2174 Fatty acid desaturase, type 1 4227 1.23519 0.016854
MIT9313_ARR_1128_x_at PMT1144 conserved hypothetical protein 5137 1.11782 0.0
MIT9313_ARR_0615_x_at PMT0625 Integral membrane protein, DUF6 4666 1.09013 0.064128
MIT9313_ARR_2216_x_at PMT2234 Urease gamma subunit 3422 1.0555 0.0
MIT9313_ARR_0621_x_at PMT0631 hypothetical 4671 1.04991 0.0
MIT9313_ARR_2219_x_at PMT2237 putative uroporphyrin-III C-methyltransferase 4250 0.980409 0.061181
MIT9313_ARR_0281_x_at PMT0285 possible Peptidase family M20/M25/M40 4465 0.967916 0.016854
MIT9313_ARR_0893_x_at PMT0908 Band 7 protein 2876 0.952653 0.0
MIT9313_ARR_2224_x_at PMT2242 Anthranilate phosphoribosyltransferase 5790 0.948019 0.016854
MIT9313_ARR_1186_x_at PMT1202 carboxysome shell protein CsoS3 2947 0.867129 0.042394
MIT9313_ARR_1295_x_at PMT1312 UDP-N-acetylglucosamine 2-epimerase 5218 0.840431 0.054705
MIT9313_RNA_0028_at 0.836621 0.043062
MIT9313_ARR_0949_x_at PMT0964 conserved hypothetical protein 2761 0.817266 0.016854
MIT9313_ARR_0831_x_at PMT0845 possible Histidine kinase-, DNA gyrase B-, phy 4787 0.774162 0.042394
MIT9313_ARR_0600_x_at PMT0609 conserved hypothetical protein 3378 0.767187 0.042394
MIT9313_ARR_2155_x_at PMT2173 conserved hypothetical protein 4226 0.744419 0.020305
MIT9313_ARR_0242_x_at PMT0246 possible Profilin 0.728541 0.020305
MIT9313_ARR_0252_x_at PMT0256 Hemolysin-type calcium-binding region:RTX N-terminal domain 0.717832 0.042394
MIT9313_ARR_2214_x_at PMT2232 urease accessory protein UreE 3424 0.714839 0.066798
MIT9313_ARR_1532_x_at PMT1549 conserved hypothetical protein 5349 0.695841 0.090909
MIT9313_ARR_1815_x_at PMT1833 conserved hypothetical protein 2598 0.690826 0.042394
MIT9313_ARR_2209_x_at PMT2227 Putative membrane protein of ABC transport system 3429 0.690089 0.063265
MIT9313_ARR_1136_at PMT1152 possible high light inducible protein 5143 0.685102 0.020305
MIT9313_ARR_0933_x_at PMT0948 possible Thermophilic metalloprotease (M29) 0.665724 0.064128
MIT9313_ARR_2217_x_at PMT2235 Urease beta subunit 3421 0.665401 0.042394
MIT9313_ARR_1466_x_at PMT1483 hypothetical 5307 0.659416 0.042394
MIT9313_ARR_2162_x_at PMT2180 conserved hypothetical 5753 0.658364 0.042394
MIT9313_ARR_0954_x_at PMT0969 possible Bacterial Cytochrome Ubiquinol Oxidase 4957 0.657582 0.042394
MIT9313_ARR_0685_x_at PMT0697 ferredoxin, 4Fe-4S 4702 0.652645 0.048998
MIT9313_ARR_2247_x_at PMT2265 conserved hypothetical protein 5797 0.646003 0.048998
MIT9313_ARR_2218_x_at PMT2236 Urease alpha subunit 3420 0.642713 0.042394
MIT9313_ARR_0341_x_at PMT0346 Type II alternative RNA polymerase sigma factor, sigma-70 family 3800 0.630295 0.042394
MIT9313_ARR_0492_x_at PMT0500 hypothetical 0.625919 0.090265
MIT9313_ARR_1138_x_at PMT1154 possible high light inducible protein 3919 0.624318 0.042394

Down-regulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_1462_x_at PMT1479 possible Extracellular link domain 5306 -3.48508 0.0
MIT9313_ARR_1091_x_at PMT1107 Exodeoxyribonuclease V 5116 -2.3378 0.042394
MIT9313_ARR_2082_x_at PMT2100 Aminotransferases class-I 2549 -2.25151 0.048998
MIT9313_ARR_1557_x_at PMT1574 possible membrane permease or ABC transporter component -1.97063 0.0
MIT9313_ARR_1413_x_at PMT1430 putative methyltransferase for Ribosomal protein L11 3866 -1.93114 0.042394
MIT9313_ARR_1908_x_at PMT1926 Glycosyl transferase, group 1 5581 -1.84513 0.016854
MIT9313_ARR_1716_x_at PMT1734 50S ribosomal protein L23 4111 -1.84222 0.0
MIT9313_ARR_1715_x_at PMT1733 50S ribosomal protein L4 4112 -1.8408 0.0
MIT9313_ARR_0746_x_at PMT0758 Predicted kinase 3416 -1.81089 0.070209
MIT9313_ARR_1643_x_at PMT1661 SMF family 5448 -1.76774 0.061181
MIT9313_ARR_1556_x_at PMT1573 ABC-transporter component -1.53228 0.0
MIT9313_ARR_1603_x_at PMT1621 possible 4'-phosphopantetheinyl transferase family protein 2426 -1.51935 0.091803
MIT9313_ARR_1717_x_at PMT1735 50S ribosomal protein L2 4110 -1.30209 0.0
MIT9313_ARR_0892_x_at PMT0907 possible Octicosapeptide repeat -1.23319 0.0
MIT9313_ARR_1729_x_at PMT1747 50S ribosomal protein L18 4098 -1.15248 0.0
MIT9313_ARR_1737_x_at PMT1755 Bacterial RNA polymerase, alpha chain 4090 -1.12006 0.0
MIT9313_ARR_1714_x_at PMT1732 50S ribosomal protein L3 4113 -1.11191 0.0
MIT9313_ARR_1455_x_at PMT1472 ATP synthase A subunit 4010 -1.10451 0.0
MIT9313_ARR_1726_x_at PMT1744 50S ribosomal protein L5 4101 -1.09663 0.0
MIT9313_ARR_1771_x_at PMT1789 S1 RNA binding domain:Ribonuclease E and G 4056 -1.06348 0.042394
MIT9313_ARR_1256_x_at PMT1272 Putative principal RNA polymerase sigma factor 2890 -1.06309 0.0
MIT9313_ARR_1727_x_at PMT1745 30S ribosomal protein S8 4100 -1.06219 0.0
MIT9313_ARR_1724_x_at PMT1742 50S Ribosomal protein L14 4103 -1.06191 0.0
MIT9313_ARR_1710_x_at PMT1728 Predicted phosphatases 4116 -1.02874 0.090909
MIT9313_ARR_1067_x_at PMT1083 putative ATP-dependent RNA helicase 3592 -1.026 0.016854
MIT9313_ARR_2072_x_at PMT2090 50S ribosomal protein L10 2553 -1.02548 0.010638
MIT9313_ARR_1719_x_at PMT1737 50S ribosomal protein L22 4108 -1.00821 0.0
MIT9313_ARR_0542_x_at PMT0551 putative sarcosine-dimethylglycine methyltransferase 4634 -1.00603 0.043062
MIT9313_ARR_1490_x_at PMT1507 RNA polymerases beta subunit 4040 -1.00236 0.0
MIT9313_ARR_0989_x_at PMT1004 Uncharacterized conserved protein, contains double-stranded beta-helix domain 3630 -0.990588 0.016854
MIT9313_ARR_1728_x_at PMT1746 50S ribosomal protein L6 4099 -0.969929 0.0
MIT9313_ARR_1738_x_at PMT1756 50S ribosomal protein L17 4089 -0.954271 0.0
MIT9313_ARR_1718_x_at PMT1736 30S Ribosomal protein S19 4109 -0.943351 0.016854
MIT9313_ARR_1453_x_at PMT1470 ATP synthase B/B' CF(0) 4008 -0.943031 0.016854
MIT9313_ARR_1725_x_at PMT1743 50S ribosomal protein L24 4102 -0.943011 0.016854
MIT9313_ARR_0165_x_at PMT0169 possible Chitin synthase -0.935539 0.016854
MIT9313_ARR_1712_x_at PMT1730 Fe-S-cluster-containing hydrogenase components 2 4115 -0.935343 0.016854
MIT9313_ARR_0574_x_at PMT0583 putative Elongation factor Ts, EF-Ts 3184 -0.93372 0.010638
MIT9313_ARR_1182_x_at PMT1198 Pterin-4a-carbinolamine dehydratase 2950 -0.931574 0.066798
MIT9313_ARR_1732_x_at PMT1750 preprotein translocase SecY subunit 4095 -0.927181 0.016854
MIT9313_ARR_1736_x_at PMT1754 30S ribosomal protein S11 4091 -0.915278 0.0
MIT9313_ARR_1181_x_at PMT1197 probable RuBisCo-expression protein CbbX 5161 -0.914031 0.042394
MIT9313_ARR_1742_x_at PMT1760 50S ribosomal protein L31 4085 -0.908222 0.0
MIT9313_ARR_2140_x_at PMT2158 SNF2 related domain:DEAD/DEAH box helicase:Helicase C-termina... 5740 -0.908031 0.092985
MIT9313_ARR_1451_x_at PMT1468 ATP synthase, delta (OSCP) subunit 4006 -0.907863 0.010638
MIT9313_ARR_0891_x_at -0.878838 0.042394
MIT9313_ARR_1488_x_at PMT1505 RNA polymerase beta prime subunit 4038 -0.872963 0.010638
MIT9313_ARR_0962_x_at PMT0977 ABC transporter, multidrug efflux family -0.868404 0.041096
MIT9313_ARR_1555_x_at PMT1572 conserved hypothetical protein -0.866617 0.016854
MIT9313_ARR_1510_x_at PMT1527 Predicted nucleic-acid-binding protein implicated in transcription termination 4048 -0.866176 0.016854