Browse Site Data
GenomesNitrogen Availability Experiment: N deprivation for 12 h
Note:Report probesets with q<=0.05
Number of probesets to report in each category: up to 20
Report intergenic probesets: no See all experiments of Nitrogen Availability: Here
Upregulated Probesets in MED4
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MED4_ARR_0953_x_at | PMM0958 | conserved hypothetical | 3415 | 4.65281 | 0.0 |
| MED4_ARR_0368_x_at | PMM0370 | putative cyanate ABC transporter, substrate binding protein | 2748 | 4.5835 | 0.0 |
| MED4_ARR_1452_x_at | PMM1462 | conserved hypothetical protein | 4016 | 4.36725 | 0.0 |
| MED4_ARR_0915_x_at | PMM0920 | Glutamine synthetase, glutamate--ammonia ligase | 3376 | 4.14178 | 0.0 |
| MED4_ARR_1036_x_at | PMM1041 | conserved hypothetical protein | 3531 | 4.10959 | 0.0 |
| MED4_ARR_0334_x_at | PMM0336 | conserved hypothetical | 2691 | 3.7755 | 0.0 |
| MED4_ARR_0965_x_at | PMM0970 | putative urea ABC transporter, substrate binding protein | 3427 | 3.75016 | 0.0 |
| MED4_ARR_0335_x_at | PMM0337 | conserved hypothetical protein | 2693 | 3.74335 | 0.0 |
| MED4_ARR_0372_at | PMM0374 | mttA/Hcf106 family | 2703 | 3.57958 | 0.0 |
| MED4_ARR_1381_at | PMM1390 | possible high light inducible protein | 3918 | 3.11654 | 0.0 |
| MED4_ARR_0683_x_at | PMM0687 | conserved hypothetical | 4653 | 3.09634 | 0.0 |
| MED4_ARR_0357_at | PMM0359 | hypothetical | 2728 | 3.03358 | 0.0 |
| MED4_ARR_0244_x_at | PMM0246 | Global nitrogen regulatory protein, CRP family of transcriptional regulators | 2596 | 3.01928 | 0.0 |
| MED4_ARR_0685_x_at | PMM0689 | possible high light inducible protein | 3099 | 2.85854 | 0.0 |
| MED4_ARR_0686_at | PMM0690 | possible high light inducible protein | 3919 | 2.76133 | 0.0 |
| MED4_ARR_0363_x_at | PMM0365 | possible DsrE-like protein | 2737 | 2.48535 | 0.0 |
| MED4_ARR_1382_x_at | PMM1391 | possible Helix-turn-helix protein, copG family | 7162 | 2.45511 | 0.0 |
| MED4_ARR_0369_x_at | PMM0371 | putative cyanate ABC transporter | 2749 | 2.37248 | 0.0 |
| MED4_ARR_0734_at | PMM0738 | conserved hypothetical | 3166 | 2.34921 | 0.0 |
| MED4_ARR_1453_x_at | PMM1463 | Nitrogen regulatory protein P-II | 4017 | 2.3456 | 0.0 |
Down-regulated Probesets in MED4
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MED4_ARR_1443_x_at | PMM1453 | ATP synthase B/B' CF(0) | 4007 | -4.66694 | 0.0 |
| MED4_ARR_1444_x_at | PMM1454 | ATP synthase B/B' CF(0) | 4008 | -4.51957 | 0.0 |
| MED4_ARR_1442_x_at | PMM1452 | ATP synthase, delta (OSCP) subunit | 4006 | -4.4425 | 0.0 |
| MED4_ARR_0548_x_at | PMM0551 | Ribulose bisphosphate carboxylase, small chain | 2945 | -4.3805 | 0.0 |
| MED4_ARR_0547_x_at | PMM0550 | Ribulose bisphosphate carboxylase, large chain | 2944 | -4.30652 | 0.0 |
| MED4_ARR_1547_x_at | PMM1557 | 50S ribosomal protein L4 | 4112 | -3.87596 | 0.0 |
| MED4_ARR_1023_x_at | PMM1028 | conserved hypothetical | 3327 | -3.70086 | 0.0 |
| MED4_ARR_1445_x_at | PMM1455 | ATP synthase subunit c | 4009 | -3.6986 | 0.0 |
| MED4_ARR_1440_x_at | PMM1450 | ATP synthase gamma subunit | 4004 | -3.63449 | 0.0 |
| MED4_ARR_0525_x_at | PMM0528 | DUF152 | 2922 | -3.61149 | 0.0306748 |
| MED4_ARR_1441_x_at | PMM1451 | ATP synthase F1, alpha subunit | 4005 | -3.44156 | 0.0 |
| MED4_ARR_1548_x_at | PMM1558 | 50S ribosomal protein L3 | 4113 | -3.43615 | 0.0 |
| MED4_ARR_1546_x_at | PMM1556 | 50S ribosomal protein L23 | 4111 | -3.27216 | 0.0 |
| MED4_ARR_1447_x_at | PMM1457 | possible ATP synthase subunit 1 | 4011 | -3.24632 | 0.0 |
| MED4_ARR_1429_x_at | PMM1439 | ATP synthase, Epsilon subunit | 3993 | -3.10583 | 0.0 |
| MED4_ARR_1544_x_at | PMM1554 | 30S Ribosomal protein S19 | 4109 | -3.09294 | 0.0 |
| MED4_ARR_1541_x_at | PMM1551 | 50S ribosomal protein L16 | 4106 | -2.95306 | 0.0 |
| MED4_ARR_1531_x_at | PMM1541 | 50S ribosomal protein L15 | 4096 | -2.93296 | 0.0 |
| MED4_ARR_1393_x_at | PMM1402 | Conserved hypothetical protein | 3946 | -2.92898 | 0.0 |
| MED4_ARR_1543_x_at | PMM1553 | 50S ribosomal protein L22 | 4108 | -2.88749 | 0.0 |
Upregulated Probesets in MIT9313
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MIT9313_ARR_0975_x_at | PMT0990 | possible high light inducible protein | 3918 | 7.82321 | 0.0 |
| MIT9313_ARR_0976_x_at | PMT0991 | possible tRNA synthetases class I (E and Q) | 4995 | 6.03733 | 0.0 |
| MIT9313_ARR_0977_at | PMT0992 | possible high light inducible protein | 3918 | 5.71417 | 0.0 |
| MIT9313_ARR_2221_x_at | PMT2239 | Ferredoxin--nitrite reductase | 5786 | 4.81639 | 0.0 |
| MIT9313_ARR_2222_x_at | PMT2240 | Formate and nitrite transporters | 5788 | 4.27784 | 0.0 |
| MIT9313_ARR_2211_x_at | PMT2229 | putative urea ABC transporter, substrate binding protein | 3427 | 4.04677 | 0.0 |
| MIT9313_ARR_1813_x_at | PMT1831 | Global nitrogen regulatory protein, CRP family of transcriptional regulators | 2596 | 3.5581 | 0.0 |
| MIT9313_ARR_2223_x_at | PMT2241 | possible Homeobox domain | 5789 | 3.26282 | 0.0 |
| MIT9313_ARR_0936_x_at | PMT0951 | conserved hypothetical protein | 2756 | 2.69179 | 0.0 |
| MIT9313_ARR_1835_x_at | PMT1853 | Ammonium transporter family | 2613 | 2.29358 | 0.0 |
| MIT9313_ARR_0924_x_at | PMT0939 | hypothetical protein | 3139 | 2.27679 | 0.0392157 |
| MIT9313_ARR_1128_x_at | PMT1144 | conserved hypothetical protein | 5137 | 2.22522 | 0.0 |
| MIT9313_ARR_0592_x_at | PMT0601 | Glutamine synthetase, glutamate--ammonia ligase | 3376 | 2.0305 | 0.0 |
| MIT9313_ARR_2156_x_at | PMT2174 | Fatty acid desaturase, type 1 | 4227 | 1.97078 | 0.0 |
| MIT9313_ARR_0949_x_at | PMT0964 | conserved hypothetical protein | 2761 | 1.93365 | 0.0 |
| MIT9313_ARR_0893_x_at | PMT0908 | Band 7 protein | 2876 | 1.54031 | 0.0 |
| MIT9313_ARR_0341_x_at | PMT0346 | Type II alternative RNA polymerase sigma factor, sigma-70 family | 3800 | 1.51309 | 0.0 |
| MIT9313_ARR_0992_x_at | PMT1007 | hypothetical | 5010 | 1.45774 | 0.0 |
| MIT9313_ARR_1297_x_at | PMT1314 | possible high light inducible protein | 5220 | 1.43361 | 0.0 |
| MIT9313_ARR_1590_x_at | PMT1608 | Uncharacterized protein conserved in bacteria | 2422 | 1.3813 | 0.0 |
Down-regulated Probesets in MIT9313
| ProbeSet | Gene | Gene Description | CyCog | Log ratio | q |
|---|---|---|---|---|---|
| MIT9313_ARR_1462_x_at | PMT1479 | possible Extracellular link domain | 5306 | -4.08797 | 0.0 |
| MIT9313_ARR_1715_x_at | PMT1733 | 50S ribosomal protein L4 | 4112 | -2.55257 | 0.0 |
| MIT9313_ARR_1557_x_at | PMT1574 | possible membrane permease or ABC transporter component | 3179 | -2.51451 | 0.0306122 |
| MIT9313_ARR_1724_x_at | PMT1742 | 50S Ribosomal protein L14 | 4103 | -2.33062 | 0.0 |
| MIT9313_ARR_1716_x_at | PMT1734 | 50S ribosomal protein L23 | 4111 | -2.28785 | 0.0 |
| MIT9313_ARR_1726_x_at | PMT1744 | 50S ribosomal protein L5 | 4101 | -2.23159 | 0.0 |
| MIT9313_ARR_1556_x_at | PMT1573 | ABC-transporter component | 3178 | -2.2051 | 0.0 |
| MIT9313_ARR_1714_x_at | PMT1732 | 50S ribosomal protein L3 | 4113 | -2.1338 | 0.0 |
| MIT9313_ARR_1725_x_at | PMT1743 | 50S ribosomal protein L24 | 4102 | -2.13101 | 0.0 |
| MIT9313_ARR_1719_x_at | PMT1737 | 50S ribosomal protein L22 | 4108 | -2.06174 | 0.0 |
| MIT9313_ARR_1723_x_at | PMT1741 | 30S Ribosomal protein S17 | 4104 | -1.84296 | 0.0 |
| MIT9313_ARR_1721_x_at | PMT1739 | 50S ribosomal protein L16 | 4106 | -1.8148 | 0.0 |
| MIT9313_ARR_1727_x_at | PMT1745 | 30S ribosomal protein S8 | 4100 | -1.69177 | 0.0 |
| MIT9313_ARR_1455_x_at | PMT1472 | ATP synthase A subunit | 4010 | -1.67956 | 0.0 |
| MIT9313_ARR_1718_x_at | PMT1736 | 30S Ribosomal protein S19 | 4109 | -1.63181 | 0.0 |
| MIT9313_ARR_1450_x_at | PMT1467 | ATP synthase F1, alpha subunit | 4005 | -1.61412 | 0.0 |
| MIT9313_ARR_0223_x_at | PMT0227 | 30S ribosomal protein S4 | 2798 | -1.61253 | 0.0 |
| MIT9313_ARR_0892_x_at | PMT0907 | possible Octicosapeptide repeat | 3445 | -1.58416 | 0.0495868 |
| MIT9313_ARR_1555_x_at | PMT1572 | conserved hypothetical protein | 5379 | -1.57562 | 0.0 |
| MIT9313_ARR_1717_x_at | PMT1735 | 50S ribosomal protein L2 | 4110 | -1.56198 | 0.0 |