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Nitrogen Availability Experiment: N deprivation for 12 h
Note:
Report probesets with q<=0.1
Number of probesets to report in each category: up to 50
Report intergenic probesets: no

See all experiments of Nitrogen Availability: Here

Upregulated Probesets in MED4

ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_0953_x_at PMM0958 conserved hypothetical 3415 4.65281 0.0
MED4_ARR_0368_x_at PMM0370 putative cyanate ABC transporter, substrate binding protein 2748 4.5835 0.0
MED4_ARR_1452_x_at PMM1462 conserved hypothetical protein 4016 4.36725 0.0
MED4_ARR_0915_x_at PMM0920 Glutamine synthetase, glutamate--ammonia ligase 3376 4.14178 0.0
MED4_ARR_1036_x_at PMM1041 conserved hypothetical protein 3531 4.10959 0.0
MED4_ARR_0334_x_at PMM0336 conserved hypothetical 2691 3.7755 0.0
MED4_ARR_0965_x_at PMM0970 putative urea ABC transporter, substrate binding protein 3427 3.75016 0.0
MED4_ARR_0335_x_at PMM0337 conserved hypothetical protein 2693 3.74335 0.0
MED4_ARR_0372_at PMM0374 mttA/Hcf106 family 2703 3.57958 0.0
MED4_ARR_1381_at PMM1390 possible high light inducible protein 3918 3.11654 0.0
MED4_ARR_0683_x_at PMM0687 conserved hypothetical 4653 3.09634 0.0
MED4_ARR_0357_at PMM0359 hypothetical 2728 3.03358 0.0
MED4_ARR_0244_x_at PMM0246 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 3.01928 0.0
MED4_ARR_0685_x_at PMM0689 possible high light inducible protein 3099 2.85854 0.0
MED4_ARR_0686_at PMM0690 possible high light inducible protein 3919 2.76133 0.0
MED4_ARR_0363_x_at PMM0365 possible DsrE-like protein 2737 2.48535 0.0
MED4_ARR_1382_x_at PMM1391 possible Helix-turn-helix protein, copG family 7162 2.45511 0.0
MED4_ARR_0369_x_at PMM0371 putative cyanate ABC transporter 2749 2.37248 0.0
MED4_ARR_0734_at PMM0738 conserved hypothetical 3166 2.34921 0.0
MED4_ARR_1453_x_at PMM1463 Nitrogen regulatory protein P-II 4017 2.3456 0.0
MED4_ARR_0361_x_at PMM0363 possible MarR family 2733 2.28312 0.0
MED4_ARR_0086_x_at PMM0087 conserved hypothetical protein 2435 2.20735 0.0
MED4_ARR_0805_x_at PMM0810 hypothetical 3242 2.20268 0.0
MED4_ARR_0445_x_at PMM0447 Uncharacterized protein required for cytochrome oxidase assembly 2839 2.19125 0.0
MED4_ARR_0370_x_at PMM0372 putative cyanate ABC transporter 2750 2.17991 0.0
MED4_ARR_1069_x_at PMM1074 Glucose-6-phosphate dehydrogenase 3565 2.16916 0.0
MED4_ARR_0444_x_at PMM0446 putative cytochrome c oxidase, subunit 2 2838 2.15757 0.0
MED4_ARR_1032_x_at PMM1037 conserved hypothetical 3527 2.1525 0.00369004
MED4_ARR_1611_x_at PMM1623 single-stranded DNA-binding protein 4178 2.08545 0.0
MED4_ARR_0243_x_at PMM0245 cob(I)alamin adenosyltransferase 2595 2.00144 0.0
MED4_ARR_1011_x_at PMM1016 possible Virion host shutoff protein 3493 1.96084 0.0762053
MED4_ARR_1045_x_at PMM1050 conserved hypothetical protein 3541 1.95923 0.0
MED4_ARR_0218_x_at PMM0220 conserved hypothetical protein (NCBI) 5346 1.91379 0.0
MED4_ARR_0074_x_at PMM0075 Uncharacterized protein conserved in bacteria 2422 1.86643 0.0
MED4_ARR_0234_x_at PMM0237 conserved hypothetical protein 2587 1.83298 0.0243902
MED4_ARR_1424_x_at PMM1434 Phosphoglycerate mutase, co-factor-independent (iPGM) 3988 1.83279 0.0
MED4_ARR_0242_x_at PMM0244 dCTP Deaminase 2594 1.79092 0.0
MED4_ARR_1128_x_at PMM1134 possible Phosphatidylinositol-specific phospho 3633 1.78541 0.0
MED4_ARR_0362_x_at PMM0364 possible Malic enzyme 2761 1.74747 0.0
MED4_ARR_1143_x_at PMM1149 conserved hypothetical 3652 1.7458 0.0
MED4_ARR_1665_x_at PMM1677 conserved hypothetical protein 4233 1.72499 0.0
MED4_ARR_1092_x_at PMM1097 RecR protein 3588 1.71144 0.00369004
MED4_ARR_0430_at PMM0432 conserved hypothetical protein 2824 1.71095 0.0
MED4_ARR_0119_x_at PMM0120 putative cell division inhibitor 2471 1.70982 0.0
MED4_ARR_1064_x_at PMM1069 putuative bifunctional Methylenetetrahydrofolate dehydrogenase Methenyltetrahydrofolate/cyclohydrolase 3560 1.70369 0.0
MED4_ARR_0658_x_at PMM0661 ribonucleotide reductase (Class II) 3062 1.70147 0.0
MED4_ARR_0035_x_at PMM0035 soluble hydrogenase small subunit 2379 1.6964 0.0
MED4_ARR_0032_x_at PMM0032 type II secretion system protein-like 2376 1.69545 0.00660066
MED4_ARR_1073_x_at PMM1078 conserved hypothetical 3569 1.68119 0.00895522
MED4_ARR_0715_x_at PMM0719 hypothetical 3139 1.67709 0.0

Down-regulated Probesets in MED4
ProbeSet Gene Gene Description CyCog Log ratio q
MED4_ARR_1443_x_at PMM1453 ATP synthase B/B' CF(0) 4007 -4.66694 0.0
MED4_ARR_1444_x_at PMM1454 ATP synthase B/B' CF(0) 4008 -4.51957 0.0
MED4_ARR_1442_x_at PMM1452 ATP synthase, delta (OSCP) subunit 4006 -4.4425 0.0
MED4_ARR_0548_x_at PMM0551 Ribulose bisphosphate carboxylase, small chain 2945 -4.3805 0.0
MED4_ARR_0547_x_at PMM0550 Ribulose bisphosphate carboxylase, large chain 2944 -4.30652 0.0
MED4_ARR_1547_x_at PMM1557 50S ribosomal protein L4 4112 -3.87596 0.0
MED4_ARR_1023_x_at PMM1028 conserved hypothetical 3327 -3.70086 0.0
MED4_ARR_1445_x_at PMM1455 ATP synthase subunit c 4009 -3.6986 0.0
MED4_ARR_1440_x_at PMM1450 ATP synthase gamma subunit 4004 -3.63449 0.0
MED4_ARR_0525_x_at PMM0528 DUF152 2922 -3.61149 0.0306748
MED4_ARR_1441_x_at PMM1451 ATP synthase F1, alpha subunit 4005 -3.44156 0.0
MED4_ARR_1548_x_at PMM1558 50S ribosomal protein L3 4113 -3.43615 0.0
MED4_ARR_1546_x_at PMM1556 50S ribosomal protein L23 4111 -3.27216 0.0
MED4_ARR_1447_x_at PMM1457 possible ATP synthase subunit 1 4011 -3.24632 0.0
MED4_ARR_1429_x_at PMM1439 ATP synthase, Epsilon subunit 3993 -3.10583 0.0
MED4_ARR_1544_x_at PMM1554 30S Ribosomal protein S19 4109 -3.09294 0.0
MED4_ARR_1541_x_at PMM1551 50S ribosomal protein L16 4106 -2.95306 0.0
MED4_ARR_1531_x_at PMM1541 50S ribosomal protein L15 4096 -2.93296 0.0
MED4_ARR_1393_x_at PMM1402 Conserved hypothetical protein 3946 -2.92898 0.0
MED4_ARR_1543_x_at PMM1553 50S ribosomal protein L22 4108 -2.88749 0.0
MED4_ARR_1542_x_at PMM1552 30S ribosomal protein S3 4107 -2.87082 0.0
MED4_ARR_1540_x_at PMM1550 50S ribosomal protein L29 4105 -2.8487 0.0
MED4_ARR_0537_at PMM0540 possible photosystem I reaction centre subunit XII (PsaM) 2934 -2.74697 0.0
MED4_ARR_1446_x_at PMM1456 ATP synthase A subunit 4010 -2.71895 0.0
MED4_ARR_1530_x_at PMM1540 preprotein translocase SecY subunit 4095 -2.6791 0.0
MED4_ARR_1527_x_at PMM1537 30S ribosomal protein S13 4092 -2.61767 0.0
MED4_ARR_1545_x_at PMM1555 50S ribosomal protein L2 4110 -2.59574 0.0
MED4_ARR_1539_x_at PMM1549 30S Ribosomal protein S17 4104 -2.57332 0.0
MED4_ARR_0305_at PMM0307 hypothetical 2658 -2.55452 0.0
MED4_ARR_0201_x_at PMM0202 50S ribosomal protein L10 2553 -2.53547 0.0
MED4_ARR_1599_x_at PMM1610 Transketolase 4165 -2.5104 0.0
MED4_ARR_1497_x_at PMM1507 30S ribosomal protein S10 4062 -2.50864 0.0
MED4_ARR_0580_x_at PMM0583 Uroporphyrinogen decarboxylase (URO-D) 2977 -2.4713 0.0
MED4_ARR_1459_x_at PMM1469 conserved hypothetical 4023 -2.46303 0.085044
MED4_ARR_0777_x_at PMM0781 Fructose-bisphosphate/sedoheptulose-1, 7-bisphosph ate aldolase 3212 -2.36389 0.0
MED4_ARR_0200_x_at PMM0201 50S ribosomal protein L7/L12 2552 -2.35805 0.0
MED4_ARR_0549_x_at PMM0552 carboxysome shell protein CsoS2 7401 -2.33266 0.0
MED4_ARR_1617_x_at PMM1629 Type II alternative RNA polymerase sigma factor, sigma-70 family 4184 -2.3165 0.0
MED4_ARR_1529_x_at PMM1539 Adenylate kinase 4094 -2.27667 0.00660066
MED4_ARR_1289_x_at PMM1298 putative dihydrolipoamide dehydrogenase 3809 -2.26185 0.0
MED4_ARR_1337_x_at PMM1346 conserved hypothetical protein 3859 -2.25754 0.0762053
MED4_ARR_1528_at PMM1538 50S Ribosomal protein L36 4093 -2.2562 0.0
MED4_ARR_1526_x_at PMM1536 30S ribosomal protein S11 4091 -2.23706 0.0
MED4_ARR_1136_x_at PMM1142 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3645 -2.22826 0.00369004
MED4_ARR_1276_x_at PMM1285 30S Ribosomal protein S16 3796 -2.21576 0.0
MED4_RNA_0019_at -2.20655 0.0
MED4_RNA_0015_at -2.20521 0.0169903
MED4_ARR_1185_x_at PMM1191 polyribonucleotide nucleotidyltransferase 3701 -2.19366 0.0
MED4_ARR_1498_x_at PMM1508 Elongation factor Tu 4063 -2.18985 0.0
MED4_ARR_0670_x_at PMM0673 Putative phosphonate binding protein for ABC transporter 3074 -2.18655 0.0

Upregulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_0975_x_at PMT0990 possible high light inducible protein 3918 7.82321 0.0
MIT9313_ARR_0976_x_at PMT0991 possible tRNA synthetases class I (E and Q) 4995 6.03733 0.0
MIT9313_ARR_0977_at PMT0992 possible high light inducible protein 3918 5.71417 0.0
MIT9313_ARR_2221_x_at PMT2239 Ferredoxin--nitrite reductase 5786 4.81639 0.0
MIT9313_ARR_2222_x_at PMT2240 Formate and nitrite transporters 5788 4.27784 0.0
MIT9313_ARR_2211_x_at PMT2229 putative urea ABC transporter, substrate binding protein 3427 4.04677 0.0
MIT9313_ARR_1813_x_at PMT1831 Global nitrogen regulatory protein, CRP family of transcriptional regulators 2596 3.5581 0.0
MIT9313_ARR_2223_x_at PMT2241 possible Homeobox domain 5789 3.26282 0.0
MIT9313_ARR_0936_x_at PMT0951 conserved hypothetical protein 2756 2.69179 0.0
MIT9313_ARR_1835_x_at PMT1853 Ammonium transporter family 2613 2.29358 0.0
MIT9313_ARR_0924_x_at PMT0939 hypothetical protein 3139 2.27679 0.0392157
MIT9313_ARR_1128_x_at PMT1144 conserved hypothetical protein 5137 2.22522 0.0
MIT9313_ARR_0592_x_at PMT0601 Glutamine synthetase, glutamate--ammonia ligase 3376 2.0305 0.0
MIT9313_ARR_2156_x_at PMT2174 Fatty acid desaturase, type 1 4227 1.97078 0.0
MIT9313_ARR_0949_x_at PMT0964 conserved hypothetical protein 2761 1.93365 0.0
MIT9313_ARR_1613_x_at PMT1631 conserved hypothetical protein 2434 1.77172 0.0995025
MIT9313_ARR_0893_x_at PMT0908 Band 7 protein 2876 1.54031 0.0
MIT9313_ARR_0341_x_at PMT0346 Type II alternative RNA polymerase sigma factor, sigma-70 family 3800 1.51309 0.0
MIT9313_ARR_0992_x_at PMT1007 hypothetical 5010 1.45774 0.0
MIT9313_ARR_1297_x_at PMT1314 possible high light inducible protein 5220 1.43361 0.0
MIT9313_ARR_0639_x_at PMT0649 conserved hypothetical protein 3403 1.39861 0.0914286
MIT9313_ARR_1590_x_at PMT1608 Uncharacterized protein conserved in bacteria 2422 1.3813 0.0
MIT9313_ARR_1137_x_at PMT1153 possible high light inducible protein 3634 1.3441 0.0217391
MIT9313_ARR_2210_x_at PMT2228 putative urea ABC transporter 3428 1.32184 0.0833333
MIT9313_RNA_0028_at 1.3044 0.0495868
MIT9313_ARR_2162_x_at PMT2180 conserved hypothetical 5753 1.256 0.0217391
MIT9313_ARR_0375_x_at PMT0382 possible Signal peptidase I 4523 1.24559 0.0592593
MIT9313_RNA_0027_at 1.20359 0.0592593
MIT9313_ARR_1996_x_at PMT2014 Bacterial regulatory protein, LuxR family 2505 1.17174 0.0495868
MIT9313_ARR_1187_x_at PMT1203 carboxysome shell protein CsoS2 5164 1.15255 0.0833333
MIT9313_ARR_1138_x_at PMT1154 possible high light inducible protein 3919 1.12768 0.0392157
MIT9313_RNA_0029_at 1.09234 0.0592593
MIT9313_ARR_0556_x_at PMT0565 6-phosphogluconate dehydrogenase 3200 1.06693 0.0833333
MIT9313_ARR_1193_x_at PMT1209 conserved hypothetical 2940 1.03659 0.0495868
MIT9313_RNA_0043_at 1.0346 0.0995025
MIT9313_RNA_0002_at 1.03183 0.0869565
MIT9313_ARR_1466_x_at PMT1483 hypothetical 5307 1.0193 0.0833333
MIT9313_ARR_0621_x_at PMT0631 hypothetical 4671 1.01157 0.0914286
MIT9313_ARR_2157_x_at PMT2175 50S ribosomal protein L9 4228 0.987333 0.0952381
MIT9313_ARR_2155_x_at PMT2173 conserved hypothetical protein 4226 0.976643 0.0914286
MIT9313_ARR_1525_x_at PMT1542 conserved hypothetical protein 5346 0.974702 0.0995025
MIT9313_RNA_0045_at 0.969593 0.0833333
MIT9313_ARR_2228_x_at PMT2246 Type II alternative RNA polymerase sigma factor, sigma-70 family 4253 0.963753 0.0892857
MIT9313_RNA_0036_at 0.94692 0.0952381
MIT9313_RNA_0039_at 0.893194 0.0892857
MIT9313_ARR_1324_x_at PMT1341 putative cytochrome c oxidase, subunit II 2838 0.888871 0.0914286

Down-regulated Probesets in MIT9313
ProbeSet Gene Gene Description CyCog Log ratio q
MIT9313_ARR_1462_x_at PMT1479 possible Extracellular link domain 5306 -4.08797 0.0
MIT9313_ARR_1715_x_at PMT1733 50S ribosomal protein L4 4112 -2.55257 0.0
MIT9313_ARR_1557_x_at PMT1574 possible membrane permease or ABC transporter component 3179 -2.51451 0.0306122
MIT9313_ARR_1724_x_at PMT1742 50S Ribosomal protein L14 4103 -2.33062 0.0
MIT9313_ARR_1716_x_at PMT1734 50S ribosomal protein L23 4111 -2.28785 0.0
MIT9313_ARR_1726_x_at PMT1744 50S ribosomal protein L5 4101 -2.23159 0.0
MIT9313_ARR_1556_x_at PMT1573 ABC-transporter component 3178 -2.2051 0.0
MIT9313_ARR_1714_x_at PMT1732 50S ribosomal protein L3 4113 -2.1338 0.0
MIT9313_ARR_1725_x_at PMT1743 50S ribosomal protein L24 4102 -2.13101 0.0
MIT9313_ARR_1719_x_at PMT1737 50S ribosomal protein L22 4108 -2.06174 0.0
MIT9313_ARR_1723_x_at PMT1741 30S Ribosomal protein S17 4104 -1.84296 0.0
MIT9313_ARR_1721_x_at PMT1739 50S ribosomal protein L16 4106 -1.8148 0.0
MIT9313_ARR_1727_x_at PMT1745 30S ribosomal protein S8 4100 -1.69177 0.0
MIT9313_ARR_1455_x_at PMT1472 ATP synthase A subunit 4010 -1.67956 0.0
MIT9313_ARR_1718_x_at PMT1736 30S Ribosomal protein S19 4109 -1.63181 0.0
MIT9313_ARR_1450_x_at PMT1467 ATP synthase F1, alpha subunit 4005 -1.61412 0.0
MIT9313_ARR_0223_x_at PMT0227 30S ribosomal protein S4 2798 -1.61253 0.0
MIT9313_ARR_0892_x_at PMT0907 possible Octicosapeptide repeat 3445 -1.58416 0.0495868
MIT9313_ARR_1555_x_at PMT1572 conserved hypothetical protein 5379 -1.57562 0.0
MIT9313_ARR_0165_x_at PMT0169 possible Chitin synthase 4364 -1.56882 0.0592593
MIT9313_ARR_1717_x_at PMT1735 50S ribosomal protein L2 4110 -1.56198 0.0
MIT9313_ARR_2072_x_at PMT2090 50S ribosomal protein L10 2553 -1.55907 0.0
MIT9313_ARR_1451_x_at PMT1468 ATP synthase, delta (OSCP) subunit 4006 -1.53589 0.0
MIT9313_ARR_1065_x_at PMT1081 RNA-binding protein RbpD 3902 -1.5136 0.0
MIT9313_ARR_1453_x_at PMT1470 ATP synthase B/B' CF(0) 4008 -1.49775 0.0
MIT9313_ARR_1728_x_at PMT1746 50S ribosomal protein L6 4099 -1.47916 0.0
MIT9313_ARR_1488_x_at PMT1505 RNA polymerase beta prime subunit 4038 -1.47251 0.0
MIT9313_ARR_1722_x_at PMT1740 50S ribosomal protein L29 4105 -1.46339 0.0
MIT9313_ARR_1740_x_at PMT1758 50S ribosomal protein L13 4087 -1.46323 0.0
MIT9313_ARR_1452_x_at PMT1469 ATP synthase B/B' CF(0) 4007 -1.44398 0.0
MIT9313_ARR_1449_x_at PMT1466 ATP synthase gamma subunit 4004 -1.3536 0.0123457
MIT9313_ARR_1433_x_at PMT1450 GroES protein (Chaperonin cpn10) 3991 -1.34034 0.0306122
MIT9313_ARR_1432_x_at PMT1449 GroEL protein (Chaperonin cpn60) 3990 -1.31481 0.0123457
MIT9313_ARR_1729_x_at PMT1747 50S ribosomal protein L18 4098 -1.29942 0.0217391
MIT9313_ARR_1741_x_at PMT1759 30S ribosomal protein S9 4086 -1.296 0.0123457
MIT9313_ARR_1720_x_at PMT1738 30S ribosomal protein S3 4107 -1.28858 0.0123457
MIT9313_ARR_1489_x_at PMT1506 RNA polymerase gamma subunit 4039 -1.27694 0.0833333
MIT9313_ARR_1735_x_at PMT1753 30S ribosomal protein S13 4092 -1.26211 0.0123457
MIT9313_ARR_1896_x_at PMT1914 putative 3-deoxy-manno-octulosonate cytidylyltransferase 5568 -1.24414 0.0892857
MIT9313_ARR_1730_x_at PMT1748 30S ribosomal protein S5 4097 -1.23016 0.0217391
MIT9313_ARR_1454_x_at PMT1471 Eubacterial and plasma membrane ATP synthase subunit C:ATP sy... 5301 -1.22766 0.0495868
MIT9313_ARR_1360_x_at PMT1377 polyribonucleotide nucleotidyltransferase 3701 -1.19415 0.0306122
MIT9313_ARR_1736_x_at PMT1754 30S ribosomal protein S11 4091 -1.17933 0.0495868
MIT9313_ARR_1490_x_at PMT1507 RNA polymerases beta subunit 4040 -1.14708 0.0592593
MIT9313_ARR_1737_x_at PMT1755 Bacterial RNA polymerase, alpha chain 4090 -1.13464 0.057377
MIT9313_RNA_0035_at -1.12094 0.0592593
MIT9313_ARR_1203_x_at PMT1219 conserved hypothetical protein 2935 -1.11169 0.0480769
MIT9313_ARR_1841_x_at PMT1859 conserved hypothetical protein 2618 -1.11046 0.0495868
MIT9313_ARR_2070_x_at PMT2088 50S ribosomal protein L11 2555 -1.10896 0.0495868
MIT9313_ARR_1818_x_at PMT1836 mttA/Hcf106 family 2703 -1.08552 0.0495868