Browse Site Data
GenomesAffymetrix Probeset: MED4_ARR_0368_x_at
| Probeset Position: 352975..354660(+) |
| Number of probes: 21 |
| Project | Exp | Time | mean(T) | mean(C) | ratio(T/C) | log2(T/C) | q |
|---|---|---|---|---|---|---|---|
| Phosphate Starvation | P-depleted | 0 h | 126.44 | 245.8 | 0.514402 | -0.959032 | 0.021 |
| Phosphate Starvation | P-depleted | 4 h | 179.8 | 238.4 | 0.754195 | -0.406991 | 0.3559 |
| Phosphate Starvation | P-depleted | 12 h | 229.23 | 232.3 | 0.986784 | -0.0191934 | 0.8901 |
| Phosphate Starvation | P-depleted | 24 h | 221.63 | 288.9 | 0.767151 | -0.382417 | 0.469 |
| Phosphate Starvation | P-depleted | 48 h | 124.65 | 165.75 | 0.752036 | -0.411126 | 0.132 |
| Nitrogen Availability | N deprivation | 0 h | NA | NA | 1.09867 | 0.135752 | 0.781789 |
| Nitrogen Availability | N deprivation | 3 h | NA | NA | 19.8153 | 4.30854 | 0.0 |
| Nitrogen Availability | N deprivation | 6 h | NA | NA | 53.0208 | 5.72849 | 0.0 |
| Nitrogen Availability | N deprivation | 12 h | NA | NA | 23.9757 | 4.5835 | 0.0 |
| Nitrogen Availability | N deprivation | 24 h | NA | NA | 16.7321 | 4.06455 | 0.0 |
| Nitrogen Availability | N deprivation | 48 h | NA | NA | 15.0721 | 3.91381 | 0.0 |
| Nitrogen Availability | Urea | log phase | NA | NA | 0.480894 | -1.05621 | 0.540299 |
| Nitrogen Availability | Cyanate | log phase | NA | NA | 2.25192 | 1.17116 | 0.0425532 |
| Light Sensing | High light | 45 min | NA | NA | 0.649 | -0.62371 | 0.0 |
| Light Sensing | White light | 45 min | NA | NA | 0.9195 | -0.121079 | 0.0 |
| Light Sensing | Blue light | 45 min | NA | NA | 1.081 | 0.112366 | 0.0 |
| Light Sensing | Red light | 45 min | NA | NA | 0.7573 | -0.401063 | 0.0 |
| Light Sensing | Green light | 45 min | NA | NA | 0.6552 | -0.609993 | 0.0 |
| Light Sensing | White light+DCMU | 45 min | NA | NA | 0.655163 | -0.610075 | 0.0 |
| Iron Availability | -Fe | 0 h | 0.0 | NA | None | -0.00433459 | 0.949883792 |
| Iron Availability | -Fe | 12 h | 0.0 | NA | None | 0.291603558 | 0.090781926 |
| Iron Availability | -Fe | 24 h | 0.0 | NA | None | 0.559736524 | 0.006952175 |
| Iron Availability | -Fe | 48 h | 0.0 | NA | None | 0.752748591 | 0.000615444 |
| Iron Availability | -Fe | 70 h rescue | 0.0 | NA | None | -1.10159814 | 5.01011e-06 |
Protein Info: PMED4_04031 putative cyanate ABC transporter, substrate binding protein
Location: 352975 - 354660 (+) on scaffold: NC_005072
Protein Length: 561 aa
|
Genome: MED4 Alternative Tag: PMM0370 MicrobesOnline ID: VIMSS565714 CyCog: CyCog2748 CyCog Size: 4 NCBI COG: COG715 Submit BLAST to NCBI nr (BLASTp) nt (BLASTn) |
Affymetrix Probeset: MED4_ARR_0368_x_at |
>PMED4_04031 MLNPVNNSTKKYNFKCGPSSADNSDQFQDNSQNSLNNLLNPANNHGYLCACVECRPIGNDHENFMSDMPDDPVEIISDFSRMGLIKNQAYEVADAISTAE MRDLLFYKNASNGDPYKEKLLRELAKEAGGLDQAFRAAFGPQAGKFFANTRASSPMGRRAFLSSLAAGAALITVACSNQNKPTKQPIDDTPININNLEKQ TLRVGFIPITCASPIIMAEPMGFYNKFGMDVKVVKMPSWGAVRDSAIAGELDAYHMLAPMPISMTLGLGTSPFSVKLASIENINGQAITVANRHKGKVKG PADMKGFIFGVPFPYSMHNLLLRYYLAKGGVDPDKDVQIRPVPPPDSIAQLVAGDIDAYLMPDPFNQRAVYEDAGFIHLLTKELWPGHPCCAFAAGEPWI NEHPETFRALNKSIIDAAAYVSTPSNRKEVAKAISGRGFLNQPTEVVEAVLTGKFEDGLGKTQNVPDRIDFKPYPWQSFSHWIQSQLIRWDLGGAVAAIQ AGDFNPNSASIFLTDEAQALEREMGGNPPTARFRKEVLAYDEFDPSNPIKYVKDQIKRDGF >PMED4_04031 ATGCTTAATCCAGTAAATAATTCTACTAAAAAGTATAATTTTAAATGTGGTCCCTCATCTGCAGATAATTCAGATCAGTTCCAAGATAATTCTCAAAATT CATTAAATAATCTTTTAAATCCAGCTAATAATCATGGATATTTGTGTGCATGCGTTGAATGCAGACCAATAGGTAATGATCATGAAAACTTCATGTCAGA TATGCCGGACGATCCAGTAGAGATAATATCTGATTTTTCTCGCATGGGTCTTATCAAAAATCAGGCTTACGAAGTAGCTGATGCCATTTCTACTGCAGAA ATGCGAGATCTTTTATTCTACAAAAATGCATCTAATGGTGATCCTTATAAAGAGAAATTATTAAGAGAATTAGCTAAAGAGGCTGGTGGATTAGATCAAG CATTTAGAGCTGCCTTTGGACCTCAAGCAGGTAAGTTTTTTGCAAATACAAGGGCTTCATCTCCTATGGGTAGGAGAGCTTTTTTATCGAGTCTTGCAGC AGGTGCAGCTTTAATTACAGTAGCTTGTTCTAATCAAAATAAACCTACAAAACAACCTATTGATGATACACCGATAAATATTAATAACTTAGAAAAACAA ACTTTACGAGTTGGTTTTATCCCAATAACATGTGCTTCGCCAATCATTATGGCAGAACCAATGGGCTTTTATAACAAGTTTGGAATGGATGTCAAAGTTG TTAAAATGCCAAGCTGGGGAGCTGTAAGAGATTCTGCCATAGCAGGTGAATTAGATGCTTACCATATGCTAGCTCCGATGCCAATTTCTATGACTCTTGG TCTAGGAACTTCACCATTTAGCGTAAAACTAGCAAGTATTGAAAATATTAATGGTCAAGCAATTACTGTTGCTAATCGTCATAAAGGCAAAGTAAAAGGA CCTGCGGATATGAAAGGCTTCATTTTTGGAGTCCCTTTCCCTTATTCAATGCATAATCTTCTTTTGAGATATTATCTTGCAAAAGGTGGTGTTGATCCAG ATAAAGACGTTCAAATTCGTCCTGTTCCACCCCCAGATAGTATTGCTCAATTAGTTGCAGGTGATATTGATGCTTACTTAATGCCTGATCCATTTAACCA AAGAGCCGTTTATGAAGATGCAGGATTCATTCATCTTCTTACAAAAGAATTATGGCCTGGTCATCCATGCTGTGCATTTGCAGCAGGAGAGCCTTGGATA AATGAGCACCCTGAAACTTTTAGAGCGCTCAATAAATCAATTATCGATGCGGCAGCCTATGTTTCAACACCTTCAAATAGAAAGGAGGTAGCTAAGGCTA TTTCGGGAAGAGGTTTTTTAAATCAACCTACTGAAGTTGTTGAAGCAGTTCTTACAGGTAAATTTGAAGACGGATTAGGTAAAACTCAAAACGTGCCTGA CCGAATTGATTTTAAACCTTATCCTTGGCAGAGTTTTTCTCATTGGATACAATCTCAGCTTATAAGATGGGATCTAGGAGGGGCTGTAGCGGCTATTCAG GCTGGTGATTTTAACCCAAATAGTGCCTCTATTTTTCTAACTGATGAAGCTCAGGCATTAGAAAGAGAAATGGGAGGTAATCCACCTACCGCTAGGTTTA GAAAAGAAGTTTTGGCTTATGATGAATTTGATCCAAGTAATCCAATCAAATATGTCAAAGATCAAATAAAAAGAGACGGTTTCTAA