Browse Site Data
GenomesAffymetrix Probeset: MED4_ARR_0494_x_at
| Probeset Position: 469063..470253(-) |
| Number of probes: 15 |
| Project | Exp | Time | mean(T) | mean(C) | ratio(T/C) | log2(T/C) | q |
|---|---|---|---|---|---|---|---|
| Phosphate Starvation | P-depleted | 0 h | 473.67 | 504.3 | 0.939262 | -0.0903999 | 0.6166 |
| Phosphate Starvation | P-depleted | 4 h | 289.95 | 227.6 | 1.27395 | 0.349304 | 0.4769 |
| Phosphate Starvation | P-depleted | 12 h | 351.8 | 173.23 | 2.03083 | 1.02207 | 0.018 |
| Phosphate Starvation | P-depleted | 24 h | 327.03 | 326.53 | 1.00153 | 0.00220743 | 0.879 |
| Phosphate Starvation | P-depleted | 48 h | 553.6 | 252.35 | 2.19378 | 1.13342 | 0.0131 |
| Nitrogen Availability | N deprivation | 0 h | NA | NA | 0.487079 | -1.03777 | 0.044586 |
| Nitrogen Availability | N deprivation | 3 h | NA | NA | 0.70753 | -0.499137 | 0.781871 |
| Nitrogen Availability | N deprivation | 6 h | NA | NA | 0.634351 | -0.656646 | 0.216383 |
| Nitrogen Availability | N deprivation | 12 h | NA | NA | 0.513594 | -0.961301 | 0.103761 |
| Nitrogen Availability | N deprivation | 24 h | NA | NA | 0.54559 | -0.874112 | 0.202198 |
| Nitrogen Availability | N deprivation | 48 h | NA | NA | 1.40149 | 0.486959 | 0.59556 |
| Nitrogen Availability | Urea | log phase | NA | NA | 0.384322 | -1.37961 | 0.0 |
| Nitrogen Availability | Cyanate | log phase | NA | NA | 0.487341 | -1.037 | 0.015625 |
| Light Sensing | High light | 45 min | NA | NA | 1.204 | 0.267835 | 0.0 |
| Light Sensing | White light | 45 min | NA | NA | 1.2245 | 0.292193 | 0.0 |
| Light Sensing | Blue light | 45 min | NA | NA | 0.499 | -1.00289 | 0.0 |
| Light Sensing | Red light | 45 min | NA | NA | 0.88 | -0.184425 | 0.0 |
| Light Sensing | Green light | 45 min | NA | NA | 0.967 | -0.0484122 | 0.0 |
| Light Sensing | White light+DCMU | 45 min | NA | NA | 0.967016 | -0.0483887 | 0.0 |
| Iron Availability | -Fe | 0 h | 0.0 | NA | None | -0.510457064 | 0.7133189 |
| Iron Availability | -Fe | 12 h | 0.0 | NA | None | 0.01720929 | 0.76201388 |
| Iron Availability | -Fe | 24 h | 0.0 | NA | None | 0.370722275 | 0.131362362 |
| Iron Availability | -Fe | 48 h | 0.0 | NA | None | 0.616357697 | 0.011641261 |
| Iron Availability | -Fe | 70 h rescue | 0.0 | NA | None | -1.12973393 | 4.55243e-06 |
Protein Info: PMED4_05451 Putative principal RNA polymerase sigma factor
Location: 469063 - 470253 (-) on scaffold: NC_005072
Protein Length: 396 aa
|
Genome: MED4 Alternative Tag: PMM0496 MicrobesOnline ID: VIMSS565844 CyCog: CyCog2890 CyCog Size: 24 NCBI COG: COG568 Submit BLAST to NCBI nr (BLASTp) nt (BLASTn) |
Affymetrix Probeset: MED4_ARR_0494_x_at |
>PMED4_05451 MCPAATESKSSNPSSKKKINKKIDSNFKNDREEESIKYQDPIQNSKQKPLNDEGSIENKDEFNGSDEEAKAIGNVKLGPKGIYTEDSIRVYLQEIGRIRL LRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEE DSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK >PMED4_05451 ATGTGTCCAGCCGCAACAGAATCAAAAAGTTCTAATCCTAGTTCCAAGAAAAAAATTAATAAAAAAATTGATTCAAATTTTAAAAACGATCGAGAAGAAG AAAGTATCAAGTATCAAGATCCTATTCAAAACTCGAAACAAAAGCCACTTAATGATGAAGGCAGTATTGAAAATAAAGATGAATTTAATGGTTCTGATGA AGAGGCCAAAGCTATTGGTAACGTAAAGCTTGGACCAAAGGGAATATACACAGAAGATTCTATAAGAGTTTATCTTCAGGAAATTGGAAGAATTAGATTA TTAAGACCTGATGAAGAAATTGAACTTGCTAGAAAAATAGCTGATCTACTCCAACTTGAAGAGCTAGCTACACAATACGAGTCTGAGAAAGGACATTTCC CTTCAGTTAGAGAATGGGCTGAATTAACCGACATGCCTCTCTCTAAATTCAGAAGAAGACTTCTCTTAGGGAGAAGAGCTAAAGAGAAGATGGTTCAATC TAATTTAAGATTAGTTGTCTCTATTGCTAAGAAATATATGAATAGAGGCCTATCTTTTCAAGATTTAATACAAGAAGGAAGCTTAGGTTTAATCAGAGCT GCCGAAAAATTTGACCATGAAAAAGGTTATAAATTTTCTACTTATGCTACTTGGTGGATTCGTCAAGCGATAACACGAGCGATAGCAGATCAAAGTAGAA CGATTAGATTGCCTGTTCACTTATATGAAACAATTTCTAGAATAAAAAAAACAACAAAAGTTCTTAGTCAAGAGTTTGGAAGAAAGCCTAGCGAAGAAGA AATAGCTGAGAGTATGGAAATGACAATTGAAAAATTAAGATTTATAGCTAAAAGTGCTCAGCTTCCAATCTCATTAGAGACACCAATAGGTAAAGAAGAG GATTCAAGGCTTGGAGACTTTATAGAAGCTGATATTGAAAATCCAGAACAAGATGTATCTAAGACTTTATTGAGAGAAGATTTAGAAGGGGTTTTGGCGA CTTTAAGCCCAAGAGAAAGGGATGTTCTAAGACTGCGATATGGAATAGATGATGGAAGGATGAAGACTCTTGAAGAGATAGGACAAATTTTTGATGTTAC AAGAGAGAGAATTAGACAAATAGAAGCAAAAGCTCTGAGAAAGCTAAGACATCCAAACAGAAATGGAGTTCTAAAAGAATATATTAAATAA