Browse Site Data
GenomesAffymetrix Probeset: MED4_ARR_0546_x_at
| Probeset Position: 518725..519021(+) |
| Number of probes: 10 |
| Project | Exp | Time | mean(T) | mean(C) | ratio(T/C) | log2(T/C) | q |
|---|---|---|---|---|---|---|---|
| Phosphate Starvation | P-depleted | 0 h | 1887.67 | 1976.0 | 0.955299 | -0.0659763 | 0.6128 |
| Phosphate Starvation | P-depleted | 4 h | 7977.0 | 7844.5 | 1.01689 | 0.0241647 | 0.653 |
| Phosphate Starvation | P-depleted | 12 h | 5797.0 | 4873.67 | 1.18945 | 0.250298 | 0.3757 |
| Phosphate Starvation | P-depleted | 24 h | 7361.67 | 6998.67 | 1.05187 | 0.0729523 | 0.768 |
| Phosphate Starvation | P-depleted | 48 h | 5323.0 | 4987.5 | 1.06727 | 0.0939227 | 0.212 |
| Nitrogen Availability | N deprivation | 0 h | NA | NA | 0.953773 | -0.0682828 | 0.820581 |
| Nitrogen Availability | N deprivation | 3 h | NA | NA | 0.614777 | -0.701865 | 0.766199 |
| Nitrogen Availability | N deprivation | 6 h | NA | NA | 0.239001 | -2.06491 | 0.0 |
| Nitrogen Availability | N deprivation | 12 h | NA | NA | 0.466889 | -1.09885 | 0.0306748 |
| Nitrogen Availability | N deprivation | 24 h | NA | NA | 0.168097 | -2.57263 | 0.0 |
| Nitrogen Availability | N deprivation | 48 h | NA | NA | 0.0947232 | -3.40014 | 0.0 |
| Nitrogen Availability | Urea | log phase | NA | NA | 0.706232 | -0.501785 | 0.116883 |
| Nitrogen Availability | Cyanate | log phase | NA | NA | 0.459273 | -1.12258 | 0.0 |
| Light Sensing | High light | 45 min | NA | NA | 1.5921 | 0.670931 | 0.0 |
| Light Sensing | White light | 45 min | NA | NA | 1.4814 | 0.566961 | 0.0 |
| Light Sensing | Blue light | 45 min | NA | NA | 1.1704 | 0.227002 | 0.0 |
| Light Sensing | Red light | 45 min | NA | NA | 1.0763 | 0.10608 | 0.0 |
| Light Sensing | Green light | 45 min | NA | NA | 0.811 | -0.302226 | 0.0 |
| Light Sensing | White light+DCMU | 45 min | NA | NA | 0.81103 | -0.302173 | 0.0 |
| Iron Availability | -Fe | 0 h | 0.0 | NA | None | -0.251538767 | 0.759860016 |
| Iron Availability | -Fe | 12 h | 0.0 | NA | None | -0.008682243 | 0.765875534 |
| Iron Availability | -Fe | 24 h | 0.0 | NA | None | -0.246395464 | 0.074673115 |
| Iron Availability | -Fe | 48 h | 0.0 | NA | None | 0.012926174 | 0.530410061 |
| Iron Availability | -Fe | 70 h rescue | 0.0 | NA | None | 0.503857533 | 0.000646283 |
Protein Info: PMED4_05981 carboxysome shell protein CsoS1 (ccmK)
Location: 518725 - 519021 (+) on scaffold: NC_005072
Protein Length: 98 aa
|
Genome: MED4 Alternative Tag: PMM0549 MicrobesOnline ID: VIMSS565897 CyCog: CyCog2943 CyCog Size: 24 NCBI COG: COG4577 Submit BLAST to NCBI nr (BLASTp) nt (BLASTn) |
Affymetrix Probeset: MED4_ARR_0546_x_at |
>PMED4_05981 MGIALGMIETRGLVPAIEAADAMTKAAEVRLIGREFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHIIARPHREVEPALGNGDFLGQKD >PMED4_05981 ATGGGTATCGCACTCGGCATGATCGAGACACGCGGACTTGTACCTGCAATCGAAGCAGCAGACGCAATGACCAAGGCAGCAGAAGTTCGTCTTATTGGTC GTGAATTCGTAGGTGGCGGTTATGTCACAGTTTTGGTTAGAGGAGAAACAGGAGCTGTCAACGCAGCAGTAAGAGCTGGAGCTGATGCTTGTGAGAGAGT TGGTGATGGTCTCGTCGCAGCTCACATCATTGCTCGCCCTCATAGAGAAGTTGAGCCAGCACTTGGTAATGGCGATTTCCTTGGTCAAAAGGACTAA