Browse Site Data
GenomesAffymetrix Probeset: MED4_ARR_0547_x_at
| Probeset Position: 519087..520502(+) |
| Number of probes: 18 |
| Project | Exp | Time | mean(T) | mean(C) | ratio(T/C) | log2(T/C) | q |
|---|---|---|---|---|---|---|---|
| Phosphate Starvation | P-depleted | 0 h | 370.5 | 747.0 | 0.495984 | -1.01163 | 0.0155 |
| Phosphate Starvation | P-depleted | 4 h | 4325.5 | 6230.0 | 0.694302 | -0.526365 | 0.1736 |
| Phosphate Starvation | P-depleted | 12 h | 2380.67 | 2879.0 | 0.826909 | -0.2742 | 0.4753 |
| Phosphate Starvation | P-depleted | 24 h | 2892.33 | 2919.0 | 0.990863 | -0.013242 | 0.876 |
| Phosphate Starvation | P-depleted | 48 h | 2039.5 | 3316.5 | 0.614956 | -0.701446 | 0.0888 |
| Nitrogen Availability | N deprivation | 0 h | NA | NA | 1.49108 | 0.576359 | 0.192846 |
| Nitrogen Availability | N deprivation | 3 h | NA | NA | 0.487717 | -1.03588 | 0.74701 |
| Nitrogen Availability | N deprivation | 6 h | NA | NA | 0.106121 | -3.23622 | 0.0 |
| Nitrogen Availability | N deprivation | 12 h | NA | NA | 0.050537 | -4.30652 | 0.0 |
| Nitrogen Availability | N deprivation | 24 h | NA | NA | 0.119994 | -3.05897 | 0.0 |
| Nitrogen Availability | N deprivation | 48 h | NA | NA | 0.0814587 | -3.61779 | 0.0 |
| Nitrogen Availability | Urea | log phase | NA | NA | 0.750246 | -0.414564 | 0.389262 |
| Nitrogen Availability | Cyanate | log phase | NA | NA | 0.440174 | -1.18385 | 0.0 |
| Light Sensing | High light | 45 min | NA | NA | 1.7208 | 0.783079 | 0.0 |
| Light Sensing | White light | 45 min | NA | NA | 1.5835 | 0.663117 | 0.0 |
| Light Sensing | Blue light | 45 min | NA | NA | 1.2752 | 0.350724 | 0.0 |
| Light Sensing | Red light | 45 min | NA | NA | 1.099 | 0.136191 | 0.0 |
| Light Sensing | Green light | 45 min | NA | NA | 0.8086 | -0.306502 | 0.0 |
| Light Sensing | White light+DCMU | 45 min | NA | NA | 0.808553 | -0.306586 | 0.0 |
| Iron Availability | -Fe | 0 h | 0.0 | NA | None | -0.440263476 | 0.746822925 |
| Iron Availability | -Fe | 12 h | 0.0 | NA | None | 0.290424404 | 0.277770229 |
| Iron Availability | -Fe | 24 h | 0.0 | NA | None | -0.005782353 | 0.604231141 |
| Iron Availability | -Fe | 48 h | 0.0 | NA | None | 0.279768422 | 0.112971257 |
| Iron Availability | -Fe | 70 h rescue | 0.0 | NA | None | 0.638768944 | 0.001443228 |
Protein Info: PMED4_05991 Ribulose bisphosphate carboxylase, large chain (rbcL)
Location: 519087 - 520502 (+) on scaffold: NC_005072
Protein Length: 471 aa
|
Genome: MED4 Alternative Tag: PMM0550 MicrobesOnline ID: VIMSS565898 CyCog: CyCog2944 CyCog Size: 24 NCBI COG: COG1850 Submit BLAST to NCBI nr (BLASTp) nt (BLASTn) |
Affymetrix Probeset: MED4_ARR_0547_x_at |
>PMED4_05991 MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLF EEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINS QPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPEELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG >PMED4_05991 ATGAGTAAGAAGTATGACGCTGGGGTAAAGGAGTACAGAGATACCTACTGGACTCCTGAATATGTCCCCCTCGACACTGATTTGTTAGCCTGTTTCAAAT GCACAGGCCAAGAAGGTGTCCCAAGAGAAGAAGTTGCAGCAGCGGTAGCGGCTGAATCTTCTACTGGTACTTGGTCGACTGTTTGGTCCGAGTTACTTAC CGACCTTGAATTTTACAAAGGCCGTTGTTATCGAATCGAAGACGTTCCTGGTGATCCAGAAGCCTTTTATGCATTTATTGCATACCCTTTAGATCTTTTC GAAGAAGGTTCAATCACAAACGTATTAACCTCTTTAGTAGGTAACGTATTTGGATTTAAAGCTTTAAGACATCTCCGTCTTGAAGATATTAGATTCCCAA TTGCTTTTATTAAGACCTGTGGTGGACCACCTAACGGAATAGTAGTTGAAAGAGATCGACTTAATAAGTATGGAAGACCACTTCTAGGTTGTACCATCAA ACCTAAATTAGGATTGTCTGGTAAGAACTACGGAAGGGTTGTCTATGAATGCCTTAGAGGGGGTCTTGATCTAACTAAAGATGATGAGAATATCAATTCT CAGCCATTCCAACGTTGGAGAGAACGATTTGAGTTCGTTGCTGAAGCCGTTAAACTTGCTCAGCAAGAAACTGGAGAAGTAAAAGGTCATTATTTAAATT GCACCGCTAATACCCCTGAAGAACTATACGAACGTGCAGAGTTTGCTAAAGAGCTTGATATGCCAATCATCATGCATGATTACATAACTGGTGGATTTAC AGCAAATACTGGCCTTGCAAACTGGTGTCGTAAAAATGGCATGCTTCTGCATATACACAGAGCTATGCACGCTGTTATTGATAGACATCCAAAACATGGT ATCCACTTCAGAGTTCTAGCGAAATGTTTAAGACTCTCTGGAGGAGACCAGTTACATACTGGAACCGTTGTTGGGAAACTAGAAGGTGATCGTCAAACTA CTCTTGGTTACATTGATAACTTAAGAGAATCATTTGTTCCCGAAGACAGATCAAGAGGTAACTTCTTTGATCAAGATTGGGGATCAATGCCTGGAGTTTT TGCTGTTGCATCTGGTGGTATCCACGTTTGGCATATGCCAGCACTGCTTGCAATATTTGGAGATGATTCTTGTCTTCAATTCGGAGGAGGAACTCATGGT CATCCATGGGGTTCAGCTGCCGGAGCTGCTGCAAACCGTGTTGCATTAGAAGCTTGTGTGAAAGCACGTAATGCAGGTCGCGAAATCGAAAAAGAGAGTA GAGACATTCTAATGGAAGCTGCTAAGCATAGTCCTGAATTAGCTATTGCACTCGAAACTTGGAAAGAAATCAAGTTTGAGTTTGATACCGTTGATAAGCT CGACGTTCAAGGCTAA