Browse Site Data
GenomesAffymetrix Probeset: MED4_ARR_0580_x_at
| Probeset Position: 547878..548918(-) |
| Number of probes: 13 |
| Project | Exp | Time | mean(T) | mean(C) | ratio(T/C) | log2(T/C) | q |
|---|---|---|---|---|---|---|---|
| Phosphate Starvation | P-depleted | 0 h | 130.1 | 103.75 | 1.25398 | 0.32651 | 0.4167 |
| Phosphate Starvation | P-depleted | 4 h | 469.8 | 487.6 | 0.963495 | -0.0536514 | 0.6428 |
| Phosphate Starvation | P-depleted | 12 h | 631.37 | 540.83 | 1.16741 | 0.22331 | 0.5851 |
| Phosphate Starvation | P-depleted | 24 h | 583.6 | 567.23 | 1.02886 | 0.041046 | 0.854 |
| Phosphate Starvation | P-depleted | 48 h | 581.85 | 567.65 | 1.02502 | 0.0356455 | 0.273 |
| Nitrogen Availability | N deprivation | 0 h | NA | NA | 0.869034 | -0.202516 | 0.594227 |
| Nitrogen Availability | N deprivation | 3 h | NA | NA | 0.587095 | -0.768335 | 0.74701 |
| Nitrogen Availability | N deprivation | 6 h | NA | NA | 0.328793 | -1.60475 | 0.0 |
| Nitrogen Availability | N deprivation | 12 h | NA | NA | 0.180328 | -2.4713 | 0.0 |
| Nitrogen Availability | N deprivation | 24 h | NA | NA | 0.293747 | -1.76736 | 0.0 |
| Nitrogen Availability | N deprivation | 48 h | NA | NA | 0.169902 | -2.55723 | 0.0051282 |
| Nitrogen Availability | Urea | log phase | NA | NA | 0.743048 | -0.428473 | 0.51773 |
| Nitrogen Availability | Cyanate | log phase | NA | NA | 0.612079 | -0.708209 | 0.0775862 |
| Light Sensing | High light | 45 min | NA | NA | 0.2816 | -1.82828 | 0.0 |
| Light Sensing | White light | 45 min | NA | NA | 0.9294 | -0.105628 | 0.0 |
| Light Sensing | Blue light | 45 min | NA | NA | 0.5445 | -0.876996 | 0.0 |
| Light Sensing | Red light | 45 min | NA | NA | 0.8251 | -0.277359 | 0.0 |
| Light Sensing | Green light | 45 min | NA | NA | 1.0743 | 0.103397 | 0.0 |
| Light Sensing | White light+DCMU | 45 min | NA | NA | 1.07433 | 0.103441 | 0.0 |
| Iron Availability | -Fe | 0 h | 0.0 | NA | None | -0.352915787 | 0.768117054 |
| Iron Availability | -Fe | 12 h | 0.0 | NA | None | -0.282789701 | 0.172349944 |
| Iron Availability | -Fe | 24 h | 0.0 | NA | None | -0.49410907 | 0.006035246 |
| Iron Availability | -Fe | 48 h | 0.0 | NA | None | -0.483984853 | 0.005893843 |
| Iron Availability | -Fe | 70 h rescue | 0.0 | NA | None | 0.69777382 | 8.33903e-05 |
Protein Info: PMED4_06321 Uroporphyrinogen decarboxylase (URO-D) (hemE)
Location: 547878 - 548918 (-) on scaffold: NC_005072
Protein Length: 346 aa
|
Genome: MED4 Alternative Tag: PMM0583 MicrobesOnline ID: VIMSS565932 CyCog: CyCog2977 CyCog Size: 24 NCBI COG: COG407 Submit BLAST to NCBI nr (BLASTp) nt (BLASTn) |
Affymetrix Probeset: MED4_ARR_0580_x_at |
>PMED4_06321 MGENLPLLLSAALGKKVNRPPVWMMRQAGRYMKIYRDLRERYPSFRERSENPELSYEISMQPFLAFKPDGVILFSDILTPLPGMGINFEIIESKGPIIED PIRNIRQVEKLKELIPNESLSFVGEVLSSLKKDVKNEATVLGFVGAPWTLAAYVVEGKSSKNYSLIKSMAFKEPDLLHKLLDHFAKSIGEYLKYQIKSGA QVVQIFDSWAGQLSPQDYDIFAGPYQKKVVDIVKEEFPDTPIILYISGSAGVLERMAKTGVDIISLDWTVDIEEACKRIPTGIGIQGNVDPGILFGNKDS IKERIDNTFNKVKERKYILNLGHGILPGTPEENAKTFFEHGKKLTY >PMED4_06321 ATGGGTGAGAATTTACCACTTTTACTATCTGCTGCCTTAGGAAAGAAAGTTAATAGGCCTCCAGTATGGATGATGAGACAAGCAGGCAGATATATGAAGA TTTACAGAGATTTAAGAGAACGCTACCCAAGCTTTAGGGAAAGGTCTGAGAACCCAGAACTCTCTTATGAAATTTCAATGCAACCTTTTTTGGCTTTCAA GCCAGATGGTGTAATTCTTTTTTCAGATATACTTACCCCTCTTCCTGGAATGGGGATCAACTTTGAGATAATAGAAAGTAAGGGTCCAATAATAGAAGAT CCCATAAGAAATATTCGCCAAGTAGAAAAGTTGAAAGAATTAATTCCGAACGAAAGTTTAAGTTTTGTGGGAGAAGTCCTTTCATCATTAAAAAAAGATG TAAAAAATGAAGCAACGGTTCTTGGCTTTGTTGGGGCGCCTTGGACTTTGGCTGCATATGTCGTTGAAGGTAAAAGCAGTAAAAATTATTCTTTAATAAA ATCAATGGCTTTTAAAGAACCTGATTTACTTCACAAACTTCTAGATCACTTTGCAAAATCCATTGGTGAGTATTTAAAGTATCAAATAAAATCTGGCGCT CAAGTTGTACAAATTTTTGACTCTTGGGCAGGGCAATTAAGTCCTCAAGACTACGATATTTTTGCTGGCCCTTATCAAAAGAAAGTTGTTGACATCGTTA AAGAAGAATTCCCAGATACTCCGATAATATTGTATATATCGGGCAGTGCTGGGGTATTAGAAAGAATGGCTAAAACTGGTGTAGATATAATTTCACTAGA CTGGACTGTAGATATTGAGGAGGCTTGCAAGCGAATCCCTACAGGAATTGGAATACAAGGAAATGTTGATCCAGGTATATTATTTGGAAATAAAGATTCA ATAAAAGAGAGAATCGATAATACTTTCAATAAAGTAAAAGAGAGAAAATATATTCTTAATTTAGGTCATGGAATTTTACCAGGCACACCAGAAGAAAATG CTAAAACATTTTTTGAACATGGTAAAAAACTAACTTATTAA