Browse Site Data
GenomesAffymetrix Probeset: MED4_ARR_0671_x_at
| Probeset Position: 641741..642922(-) |
| Number of probes: 15 |
| Project | Exp | Time | mean(T) | mean(C) | ratio(T/C) | log2(T/C) | q |
|---|---|---|---|---|---|---|---|
| Phosphate Starvation | P-depleted | 0 h | 39.78 | 43.9 | 0.90615 | -0.142178 | 0.5655 |
| Phosphate Starvation | P-depleted | 4 h | 48.8 | 28.5 | 1.71228 | 0.775919 | 0.2818 |
| Phosphate Starvation | P-depleted | 12 h | 57.13 | 40.74 | 1.40231 | 0.487803 | 0.2792 |
| Phosphate Starvation | P-depleted | 24 h | 75.17 | 77.12 | 0.974715 | -0.0369481 | 0.856 |
| Phosphate Starvation | P-depleted | 48 h | 44.48 | 36.47 | 1.21963 | 0.286447 | 0.183 |
| Nitrogen Availability | N deprivation | 0 h | NA | NA | 0.810942 | -0.30233 | 0.541587 |
| Nitrogen Availability | N deprivation | 3 h | NA | NA | 0.793132 | -0.334366 | 0.866325 |
| Nitrogen Availability | N deprivation | 6 h | NA | NA | 0.601613 | -0.733091 | 0.175084 |
| Nitrogen Availability | N deprivation | 12 h | NA | NA | 0.522378 | -0.936835 | 0.191339 |
| Nitrogen Availability | N deprivation | 24 h | NA | NA | 0.37968 | -1.39715 | 0.498747 |
| Nitrogen Availability | N deprivation | 48 h | NA | NA | 0.146042 | -2.77554 | 0.0811744 |
| Nitrogen Availability | Urea | log phase | NA | NA | 1.03009 | 0.0427689 | 0.985018 |
| Nitrogen Availability | Cyanate | log phase | NA | NA | 1.41134 | 0.497065 | 0.953996 |
| Light Sensing | High light | 45 min | NA | NA | 1.1921 | 0.253505 | 0.0 |
| Light Sensing | White light | 45 min | NA | NA | 1.2623 | 0.336055 | 0.0 |
| Light Sensing | Blue light | 45 min | NA | NA | 1.1838 | 0.243425 | 0.0 |
| Light Sensing | Red light | 45 min | NA | NA | 1.4433 | 0.529371 | 0.0 |
| Light Sensing | Green light | 45 min | NA | NA | 0.899 | -0.153607 | 0.0 |
| Light Sensing | White light+DCMU | 45 min | NA | NA | 0.898975 | -0.153647 | 0.0 |
| Iron Availability | -Fe | 0 h | 0.0 | NA | None | -0.109358756 | 0.919821404 |
| Iron Availability | -Fe | 12 h | 0.0 | NA | None | -0.147202107 | 0.526686837 |
| Iron Availability | -Fe | 24 h | 0.0 | NA | None | -0.15521265 | 0.372963118 |
| Iron Availability | -Fe | 48 h | 0.0 | NA | None | -0.343732465 | 0.096677118 |
| Iron Availability | -Fe | 70 h rescue | 0.0 | NA | None | 0.804879608 | 0.000125467 |
Protein Info: PMED4_07301 Aminotransferases class-I (aspC)
Location: 641741 - 642922 (-) on scaffold: NC_005072
Protein Length: 393 aa
|
Genome: MED4 Alternative Tag: PMM0674 MicrobesOnline ID: VIMSS566024 CyCog: CyCog3075 CyCog Size: 24 NCBI COG: COG436 Submit BLAST to NCBI nr (BLASTp) nt (BLASTn) |
Affymetrix Probeset: MED4_ARR_0671_x_at Diel FDR ( cutoff=0.1 ): 0.04141122 Is Expressed: True |
>PMED4_07301 MSEVNLSKRALSIEPSLTLQISAKANQLAKEGKDICNLSAGEPDFDAPNEILKATSEAIFDGYTKYGPASGDLELRKAIAEKLQTQNNLNVEYENVMVTN GAKQSIYNLFQVLLNDGDEVIIPAPYWLSYPQMVRLAGGKPVFLNSSAEDGFKINIQDLKSKISPKTKFIIINSPNNPTGRVMPKEELLQIAELVRENKN INILSDEIYELILKKEFKHLSLASLATDLKERIFIINGFAKGWAMTGWRVGYLVGQKDVIKASSALQSQSTSNVCSFVQRGALEALKINREFFLEINSHY DLRREVLYKGLKNIEGLFISPPNGAFYAFPRLPNNSMTSVEFCKRILNDYGLVVVPGKPFGDDQCIRISCASSKEKILDGLTRLEKGILNYYF >PMED4_07301 ATGAGTGAAGTAAATTTATCAAAAAGAGCACTCTCTATTGAGCCTTCACTTACTCTGCAGATAAGTGCTAAAGCTAACCAACTCGCAAAAGAGGGAAAAG ACATCTGTAATTTAAGTGCTGGAGAACCAGACTTTGATGCTCCCAATGAAATATTAAAAGCAACAAGTGAGGCTATATTTGATGGATATACAAAATATGG TCCTGCCTCAGGAGATTTAGAACTTAGAAAAGCCATTGCTGAAAAACTTCAAACCCAAAACAATTTAAATGTTGAATATGAAAATGTAATGGTAACAAAT GGAGCAAAACAGTCAATTTATAATCTTTTCCAGGTTTTATTGAATGATGGGGACGAAGTGATTATACCTGCTCCTTATTGGTTAAGCTATCCTCAGATGG TTAGATTGGCAGGGGGAAAGCCTGTATTCCTAAATTCTTCTGCTGAAGATGGATTCAAAATAAATATACAAGATTTAAAATCTAAGATATCTCCAAAAAC GAAATTTATAATTATTAATTCTCCCAACAATCCAACTGGTAGAGTAATGCCAAAAGAAGAGTTGTTACAAATTGCAGAATTAGTAAGAGAAAACAAAAAT ATTAATATTCTTTCAGATGAGATTTACGAATTAATTCTTAAAAAAGAATTTAAGCATTTAAGTTTAGCTTCACTAGCAACTGACTTAAAAGAAAGAATTT TTATAATTAATGGTTTTGCAAAGGGTTGGGCAATGACTGGGTGGAGAGTTGGTTATTTAGTAGGACAAAAAGATGTTATTAAAGCATCATCAGCCTTACA AAGCCAAAGTACAAGTAATGTTTGTTCTTTCGTTCAAAGAGGTGCTCTAGAGGCTTTAAAAATAAACCGAGAATTTTTCTTAGAAATCAATAGCCATTAT GATCTAAGAAGAGAAGTCCTTTATAAAGGGCTAAAAAATATCGAAGGACTATTTATATCTCCACCTAATGGAGCTTTTTATGCATTTCCTAGATTACCTA ATAACTCCATGACTTCTGTAGAGTTTTGCAAAAGAATTCTTAATGATTATGGTTTAGTGGTGGTGCCTGGAAAACCTTTTGGTGATGATCAATGTATTAG GATATCTTGTGCCTCTTCAAAAGAAAAGATTCTTGATGGCTTAACAAGATTAGAGAAAGGGATTTTAAATTATTACTTTTAA