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Publications by author: Chisholm
  1. Global genetic capacity for mixotrophy in marine picocyanobacteria.
    Alexis P. Yelton, Silvia G. Acinas, Shinichi Sunagawa, Peer Bork, Carlos Pedrós-Alió, Sallie W. Chisholm
    Submitted
    Download: Additional Raw Data
    Pubmed: 99999999
    Abstract
  2. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus.
    Steven J. Biller, Paul M. Berube,Jessie W. Berta-Thompson,Libusha Kelly, Sara E. Roggensack, Lana Awad,Kathryn H. Roache-Johnson,Huiming Ding, Stephen J. Giovannoni, Gabrielle Rocap,Lisa R. Moore, Sallie W. Chisholm
    Sci. Data 1:140034 doi: 10.1038/sdata.2014.34 (2014).
    Download: Additional Raw Data
    Pubmed: 25977791
    Abstract
  3. Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent.
    Kelly L, Ding H, Huang KH, Osburne MS, Chisholm SW.
    ISME J. 2013 Sep;7(9):1827-41.
    Download: Additional Raw Data
    Pubmed: 23657361
    Abstract
  4. Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle
    Jacob R. Waldbauer, Sébastien Rodrigue, Maureen L. Coleman, and Sallie W. Chisholm
    PLoS One. 2012;7(8):e43432. Epub 2012 Aug 29
    Download: Additional Raw Data
    Pubmed: 22952681
    Abstract
  5. ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage.
    Libusha Kelly, Katherine H. Huang, Huiming Ding, and Sallie W. Chisholm
    Nucl. Acids Res. (2011) doi: 10.1093/nar/gkr1022
    Pubmed: 22102570
    Abstract
  6. Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability.
    Thompson AW, Huang K, Saito MA, Chisholm SW
    ISME J. 2011 Oct;5(10):1580-94.
    Pubmed: 21562599
    Abstract
  7. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.
    Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, Osburne MS, Henn MR, Chisholm SW
    Environ Microbiol. 2010 Nov
    Pubmed: 20662890
    Abstract
  8. Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus.
    Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty MT, Schmid MF, Osburne MS, Chisholm SW, Chiu W
    Nat Struct Mol Biol. 2010 Jul;17(7):830-6. Epub 2010 Jun 13.
    Pubmed: 20543830
    Abstract
  9. Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus.
    Steglich C, Lindell D, Futschik M, Rector T, Steen R, Chisholm SW
    Genome Biol. 2010 May 19;11(5):R54.
    Download: Additional Raw Data
    Pubmed: 20482874
    Abstract
  10. Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.
    Li B, Sher D, Kelly L, Shi Y, Huang K, Knerr PJ, Joewono I, Rusch D, Chisholm SW, van der Donk WA
    Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10430-5. Epub 2010 May 17.
    Pubmed: 20479271
    Abstract
  11. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans.
    Malmstrom RR, Coe A, Kettler GC, Martiny AC, Frias-Lopez J, Zinser ER, Chisholm SW
    ISME J. 2010 May 13.
    Pubmed: 20463762
    Abstract
  12. UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase.
    Osburne MS, Holmbeck BM, Frias-Lopez J, Steen R, Huang K, Kelly L, Coe A, Waraska K, Gagne A, Chisholm SW
    Environ Microbiol. 2010 Mar 23.
    Pubmed: 20345942
    Abstract
  13. Modeling selective pressures on phytoplankton in the global ocean.
    Bragg JG, Dutkiewicz S, Jahn O, Follows MJ, Chisholm SW
    PLoS One. 2010 Mar 10;5(3):e9569.
    Pubmed: 20224766
    Abstract
  14. Analysis of high-throughput sequencing and annotation strategies for phage genomes.
    Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, Birren BW, Chisholm SW
    PLoS One. 2010 Feb 5;5(2):e9083.
    Pubmed: 20140207
    Abstract
  15. Analysis of high-throughput sequencing and annotation strategies for phage genomes.
    Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, Birren BW, Chisholm SW
    PLoS One. 2010
    Pubmed: 20140207
    Abstract
  16. The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'
    Sullivan MB, Krastins B, Hughes JL, Kelly L, Chase M, Sarracino D, Chisholm SW
    Environ Microbiol. 2009 Oct 14.
    Pubmed: 19840100
    Abstract
  17. Whole genome amplification and de novo assembly of single bacterial cells.
    Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW
    PLoS One. 2009 Sep 2;4(9):e6864.
    Download: Additional Raw Data
    Pubmed: 19724646
    Abstract
  18. Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus.
    Zinser ER, Lindell D, Johnson ZI, Futschik ME, Steglich C, Coleman ML, Wright MA, Rector T, Steen R, McNulty N, Thompson LR, Chisholm SW
    PLoS ONE. 2009;4(4):e5135. Epub 2009 Apr 8.
    Pubmed: 19352512
    Abstract
  19. Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport.
    Klein MG, Zwart P, Bagby SC, Cai F, Chisholm SW, Heinhorst S, Cannon GC, Kerfeld CA
    J Mol Biol. 2009 Mar 27.
    Pubmed: 19328811
    Abstract
  20. Use of Stable Isotope-Labelled Cells To Identify Active Grazers of Picocyanobacteria In Ocean Surface Waters
    Frias-Lopez J, Thompson A, Waldbauer J, Chisholm SW
    Environ Microbiol. 2009 Feb;11(2):512-25.
    Pubmed: 19196281
    Abstract
  21. Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus.
    Martiny AC, Tai AP, Veneziano D, Primeau F, Chisholm SW
    Environ Microbiol. 2008 Nov 11.
    Download: Additional Raw Data
    Pubmed: 19021692
    Abstract
  22. Modeling The Fitness Consequences of A Cyanophage-Encoded Photosynthesis Gene.
    Bragg JG, Chisholm SW
    PLoS ONE. 2008;3(10):e3550. Epub 2008 Oct 29.
    Pubmed: 18958282
    Abstract
  23. The Challenge of Regulation In A Minimal Photoautotroph: Non-Coding RNAs In Prochlorococcus
    Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR
    PLoS Genet. 2008 Aug 29;4(8):e1000173.
    Pubmed: 18769676
    Abstract
  24. Portal Protein Diversity and Phage Ecology
    Sullivan MB, Coleman ML, Quinlivan V, Rosenkrantz JE, Defrancesco AS, Tan G, Fu R, Lee JA, Waterbury JB, Bielawski JP, Chisholm SW
    Environ Microbiol. 2008 Jul 31.
    Pubmed: 18673386
    Abstract
  25. Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria.
    Dammeyer T, Bagby SC, Sullivan MB, Chisholm SW, Frankenberg-Dinkel N
    Curr Biol. 2008 Mar 25;18(6):442-8.
    Pubmed: 18356052
    Abstract
  26. Microbial Community Gene Expression In Ocean Surface Waters
    Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF
    Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3805-10. Epub 2008 Mar 3.
    Pubmed: 18316740
    Abstract
  27. Patterns and Implications of Gene Gain and Loss In The Evolution of Prochlorococcus
    Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW
    PLoS Genet. 2007 Dec;3(12):e231.
    Download: Additional Raw Data
    Pubmed: 18159947
    Abstract
  28. Genome-Wide Expression Dynamics of A Marine Virus and Host Reveal Features of Co-Evolution
    Lindell D, Jaffe JD, Coleman ML, Futschik ME, Axmann IM, Rector T, Kettler G, Sullivan MB, Steen R, Hess WR, Church GM, Chisholm SW
    Nature. 2007 Sep 6;449(7158):83-6.
    Download: Additional Raw Data
    Pubmed: 17805294
    Abstract
  29. Code and Context: Prochlorococcus As A Model For Cross-Scale Biology
    Coleman ML, Chisholm SW
    Trends Microbiol. 2007 Sep;15(9):398-407. Epub 2007 Aug 10.
    Pubmed: 17693088
    Abstract
  30. Emergent Biogeography of Microbial Communities In A Model Ocean
    Follows MJ, Dutkiewicz S, Grant S, Chisholm SW
    Science. 2007 Mar 30;315(5820):1843-6.
    Pubmed: 17395828
    Abstract
  31. Electron Cryo-Tomography of Prochlorococcus Shows Cytoplasmic and Periplasmic Structural Features
    Marsh, MP; Cruciano, AC; Thompson, LR; Chisholm, SW; Chiu, W
    Biophysical Journal. 2007 ():504A-505A
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  32. Influence of Light and Temperature On Prochlorococcus Ecotype Distributions In The Atlantic Ocean
    Zinser, ER; Johnson, ZI; Coe, A; Karaca, E; Veneziano, D; Chisholm, SW
    Limnology and Oceanography. 2007 52(5):2205-2220
    Download: Additional Raw Data
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    Abstract
  33. Culturing The Marine Cyanobacterium Prochlorococcus
    Moore, LR; Coe, A; Zinser, ER; Saito, MA; Sullivan, MB; Lindell, D; Frois-Moniz, K; Waterbury, J; Chisholm, SW
    Limnology and Oceanography-Methods. 2007 5():353-362
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    Abstract
  34. Global Gene Expression of Prochlorococcus Ecotypes In Response To Changes In Nitrogen Availability
    Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, Steen R, Church GM, Chisholm SW
    Mol Syst Biol. 2006;2:53. Epub 2006 Oct 3.
    Browse this dataset: Here
    Download: Additional Raw Data
    Pubmed: 17016519
    Abstract
  35. Genome-Wide Analysis of Light Sensing In Prochlorococcus
    Steglich C, Futschik M, Rector T, Steen R, Chisholm SW
    J Bacteriol. 2006 Nov;188(22):7796-806. Epub 2006 Sep 15.
    Browse this dataset: Here
    Download: Additional Raw Data
    Pubmed: 16980454
    Abstract
  36. Phosphate Acquisition Genes In Prochlorococcus Ecotypes: Evidence For Genome-Wide Adaptation
    Martiny AC, Coleman ML, Chisholm SW
    Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12552-7. Epub 2006 Aug 8.
    Browse this dataset: Here
    Download: Additional Raw Data
    Pubmed: 16895994
    Abstract
  37. Prevalence and Evolution of Core Photosystem Ii Genes In Marine Cyanobacterial Viruses and Their Hosts
    Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, Chisholm SW
    PLoS Biol. 2006 Jul;4(8):e234.
    Pubmed: 16802857
    Abstract
  38. Sequencing Genomes From Single Cells By Polymerase Cloning
    Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM
    Nat Biotechnol. 2006 Jun;24(6):680-6. Epub 2006 May 28.
    Pubmed: 16732271
    Abstract
  39. Genomic Islands and The Ecology and Evolution of Prochlorococcus
    Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, Delong EF, Chisholm SW
    Science. 2006 Mar 24;311(5768):1768-70.
    Pubmed: 16556843
    Abstract
  40. Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients
    Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW
    Science. 2006 Mar 24;311(5768):1737-40.
    Download: Additional Raw Data
    Pubmed: 16556835
    Abstract
  41. Measurement of Prochlorococcus Ecotypes Using Real-Time Polymerase Chain Reaction Reveals Different Abundances of Genotypes With Similar Light Physiologies
    Ahlgren NA, Rocap G, Chisholm SW
    Environ Microbiol. 2006 Mar;8(3):441-54.
    Pubmed: 16478451
    Abstract
  42. Community Genomics Among Stratified Microbial Assemblages In The Ocean's Interior
    DeLong, EF; Preston, CM; Mincer, T; Rich, V; Hallam, SJ; Frigaard, NU; Martinez, A; Sullivan, MB; Edwards, R; Brito, BR; Chisholm, SW; Karl, DM
    Science. 2006 311(5760):496-503
    Pubmed: 16439655
    Abstract
  43. Prochlorococcus Ecotype Abundances In The North Atlantic Ocean As Revealed By An Improved Quantitative Pcr Method
    Zinser ER, Coe A, Johnson ZI, Martiny AC, Fuller NJ, Scanlan DJ, Chisholm SW
    Appl Environ Microbiol. 2006 Jan;72(1):723-32.
    Pubmed: 16391112
    Abstract
  44. Photosynthesis Genes In Marine Viruses Yield Proteins During Host Infection
    Lindell D, Jaffe JD, Johnson ZI, Church GM, Chisholm SW
    Nature. 2005 Nov 3;438(7064):86-9. Epub 2005 Oct 12.
    Pubmed: 16222247
    Abstract
  45. Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations
    Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW
    PLoS Biol. 2005 May;3(5):e144. Epub 2005 Apr 19.
    Download: Additional Raw Data
    Pubmed: 15828858
    Abstract
  46. Release of Dissolved Organic Matter By Prochlorococcus
    Bertilsson, S; Berglund, O; Pullin, MJ; Chisholm, SW
    Vie Et Milieu-Life and Environment. 2005 55(3-4):225-231
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    Abstract
  47. Quantitative Proteomics of Prochlorococcus Marinus
    Leptos, Kyriacos C.; Jaffe, Jacob D.; Zinser, Erik; Lindell, Debbie; Chisholm, Sallie W.; Church, George M.
    Cancer Genomics & Proteomics. 2005 2(3):178-
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  48. Patterns and Regulation of Clade-Specific Diversity of Prochlorococcus In The Atlantic Ocean
    Johnson, Z.; Zinser, E.; Coe, A.; Chisholm, S. W.
    Abstracts of The General Meeting of The American Society For Microbiology. 2005 105():379-
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  49. Properties of Overlapping Genes Are Conserved Across Microbial Genomes
    Johnson ZI, Chisholm SW
    Genome Res. 2004 Nov;14(11):2268-72.
    Pubmed: 15520290
    Abstract
  50. Transfer of Photosynthesis Genes To and From Prochlorococcus Viruses
    Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW
    Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11013-8. Epub 2004 Jul 15.
    Pubmed: 15256601
    Abstract
  51. Cyanophages Infecting The Oceanic Cyanobacterium Prochlorococcus
    Sullivan MB, Waterbury JB, Chisholm SW
    Nature. 2003 Aug 28;424(6952):1047-51.
    Pubmed: 12944965
    Abstract
  52. Genome Divergence In Two Prochlorococcus Ecotypes Reflects Oceanic Niche Differentiation
    Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA, Arellano A, Coleman M, Hauser L, Hess WR, Johnson ZI, Land M, Lindell D, Post AF, Regala W, Shah M, Shaw SL, Steglich C, Sullivan MB, Ting CS, Tolonen A, Webb EA, Zinser ER, Chisholm SW
    Nature. 2003 Aug 28;424(6952):1042-7. Epub 2003 Aug 13.
    Download: Additional Raw Data
    Pubmed: 12917642
    Abstract
  53. Elemental Composition of Marine Prochlorococcus and Synechococcus: Implications For The Ecological Stoichiometry of The Sea
    Bertilsson, S; Berglund, O; Karl, DM; Chisholm, SW
    Limnology and Oceanography. 2003 48(5):1721-1731
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    Abstract
  54. Isoprene Production By Prochlorococcus, A Marine Cyanobacterium, and Other Phytoplankton
    Shaw, SL; Chisholm, SW; Prinn, RG
    Marine Chemistry. 2003 80(4):PII S0304-4203(02)00101-9-
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    Abstract
  55. Genomic and Physiological Analyses of Environmental Stress Response Mechanisms In Two Closely Related Marine Cyanobacteria.
    Ting, C. S.; Chisholm, S. W.; King, J.
    Abstracts of The General Meeting of The American Society For Microbiology. 2003 103():N-103
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    Abstract
  56. Correlation of the cytochrome c (550) content of cyanobacterial Photosystem II with the EPR properties of the oxygen-evolving complex.
    Lakshmi KV, Reifler MJ, Chisholm DA, Wang JY, Diner BA, Brudvig GW
    Photosynth Res. 2002;72(2):175-89.
    Pubmed: 16228516
    Abstract
  57. Is Ocean Fertilization Credible and Creditable? Response
    Chisholm, SW; Falkowski, PG; Cullen, JJ
    Science. 2002 296(5567):467-468
    Pubmed: 11965672
  58. Resolution of Prochlorococcus and Synechococcus Ecotypes By Using 16S-23S Ribosomal Dna Internal Transcribed Spacer Sequences
    Rocap G, Distel DL, Waterbury JB, Chisholm SW
    Appl Environ Microbiol. 2002 Mar;68(3):1180-91.
    Pubmed: 11872466
    Abstract
  59. Cyanobacterial Photosynthesis In The Oceans: The Origins and Significance of Divergent Light-Harvesting Strategies
    Ting CS, Rocap G, King J, Chisholm SW
    Trends Microbiol. 2002 Mar;10(3):134-42.
    Pubmed: 11864823
    Abstract
  60. Copper Toxicity and Cyanobacteria Ecology In The Sargasso Sea
    Mann, EL; Ahlgren, N; Moffett, JW; Chisholm, SW
    Limnology and Oceanography. 2002 47(4):976-988
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    Abstract
  61. Utilization of Different Nitrogen Sources By The Marine Cyanobacteria Prochlorococcus and Synechococcus
    Moore, LR; Post, AF; Rocap, G; Chisholm, SW
    Limnology and Oceanography. 2002 47(4):989-996
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    Abstract
  62. Cross-Scale Ecological Dynamics and Microbial Size Spectra In Marine Ecosystems
    Rinaldo, A; Maritan, A; Cavender-Bares, KK; Chisholm, SW
    Proceedings of The Royal Society B-Biological Sciences. 2002 269(1504):2051-2059
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    Abstract
  63. Cobalt Limitation and Uptake In Prochlorococcus
    Saito, MA; Moffett, JW; Chisholm, SW; Waterbury, JB
    Limnology and Oceanography. 2002 47(6):1629-1636
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    Abstract
  64. The Photosynthetic Apparatus of Prochlorococcus: Insights Through Comparative Genomics
    Hess WR, Rocap G, Ting CS, Larimer F, Stilwagen S, Lamerdin J, Chisholm SW
    Photosynth Res. 2001;70(1):53-71.
    Pubmed: 16228362
    Abstract
  65. Phycobiliprotein Genes of The Marine Photosynthetic Prokaryote Prochlorococcus: Evidence For Rapid Evolution of Genetic Heterogeneity
    Ting CS, Rocap G, King J, Chisholm SW
    Microbiology. 2001 Nov;147(Pt 11):3171-82.
    Pubmed: 11700369
    Abstract
  66. Oceans - Dis-Crediting Ocean Fertilization
    Chisholm, SW; Falkowski, PG; Cullen, JJ
    Science. 2001 294(5541):309-310
    Pubmed: 11598285
  67. Microbial Size Spectra From Natural and Nutrient Enriched Ecosystems
    Cavender-Bares, KK; Rinaldo, A; Chisholm, SW
    Limnology and Oceanography. 2001 46(4):778-789
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    Abstract
  68. Nutrient Gradients In The Western North Atlantic Ocean: Relationship To Microbial Community Structure and Comparison To Patterns In The Pacific Ocean
    Cavender-Bares, KK; Karl, DM; Chisholm, SW
    Deep-Sea Research Part I-Oceanographic Research Papers. 2001 48(11):2373-2395
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    Abstract
  69. Phytoplankton Population Dynamics At The Bermuda Atlantic Time-Series Station In The Sargasso Sea
    DuRand, MD; Olson, RJ; Chisholm, SW
    Deep-Sea Research Part Ii-Topical Studies In Oceanography. 2001 48(8-9):1983-2003
    Browse this dataset: Here
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    Abstract
  70. Photoacclimation Kinetics of Single-Cell Fluorescence In Laboratory and Field Populations of Prochlorococcus
    Dusenberry, JA; Olson, RJ; Chisholm, SW
    Deep-Sea Research Part I-Oceanographic Research Papers. 2001 48(6):1443-1458
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    Abstract
  71. Niche Adaptation of Prochlorococcus Ecotypes: Insights Through Comparative Genomics
    Hess, W. R.; Rocap, G.; Steglich, C.; Post, A.; Ting, C. S.; Chisholm, S. W.
    Journal of Phycology. 2001 37(3 Supplement):23-24
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  72. Phycoerythrin and The Photosynthetic Apparatus of Prochlorococcus: Insights Through Comparative Genomics
    Hess, W. R.; Rocap, G.; Chisholm, S. W.
    Photosynthesis Research. 2001 69(1-3):271-
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  73. Oceanography - Stirring Times In The Southern Ocean
    Chisholm, SW
    Nature. 2000 407(6805):685-687
    Pubmed: 11048702
  74. In Situ Hybridization of Prochlorococcus and Synechococcus (Marine Cyanobacteria) Spp. With Rrna-Targeted Peptide Nucleic Acid Probes
    Worden AZ, Chisholm SW, Binder BJ
    Appl Environ Microbiol. 2000 Jan;66(1):284-9.
    Pubmed: 10618237
    Abstract
  75. Field Observations of Oceanic Mixed Layer Dynamics and Picophytoplankton Photoacclimation
    Dusenberry, JA; Olson, RJ; Chisholm, SW
    Journal of Marine Systems. 2000 24(3-4):221-232
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    Abstract
  76. Iron Limits The Cell Division Rate of Prochlorococcus In The Eastern Equatorial Pacific
    Mann, EL; Chisholm, SW
    Limnology and Oceanography. 2000 45(5):1067-1076
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    Abstract
  77. The Effectiveness of The Consed Autofinish Program In Automating The Finishing Process For Microbial Genomes Derived By Whole Genome Shotgun
    Arellano, A.; Trong, S.; Chain, P.; Do, L.; Stilwagen, S.; Burkhart-Schultz, K.; Janecki, T.; Erler, A.; Mariero, L.; Sanders, C.; Johnson, G.; Sakaldasis, G.; Regala, W.; Rivera, A.; Bhakta, R.; Golinveaux, K.; Tran, M.; Lao, V.; Pitesky, M.; Duarte, S.; Kobayashi, A.; Larimer, F.; Arp, D.; Chisholm, S.; Harwood, Caroline; Meeks, J.; Lamerdin, J. E.
    International Genome Sequencing and Analysis Conference. 2000 12():48-
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    Abstract
  78. Annotation of Microbial Genomes For High-Throughput Sequencing
    Larimer, F.; Land, M.; Hyatt, D.; Shah, M.; Arellano, A.; Stilwagen, S.; Do, L.; Chain, P.; Kobayashi, A.; Arp, D.; Hooper, A.; Chisholm, S.; Rocap, G.; Harwood, C.; Meeks, J.; Weinstock, G.; Uberbacher, E.; Branscomb, E.; Lamerdin, J.
    International Genome Sequencing and Analysis Conference. 2000 12():104-
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    Abstract
  79. Genomic Sequencing and Analysis of The Marine Cyanobacterium, Prochlorococcus Marinus (Med4)
    Stilwagen, S.; Arellano, A.; Burkhart-Schultz, K.; Janecki, T.; Erler, A.; Mariero, L.; Attix, T.; Sanders, C.; Do, L.; Johnson, G.; Sakaldasis, G.; Regala, W.; Duarte, S.; Kobayashi, A.; Larimer, F.; Chisholm, S.; Rocap, G.; Lamerdin, J. E.
    International Genome Sequencing and Analysis Conference. 2000 12():92-93
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    Abstract
  80. Differential Response of Equatorial Pacific Phytoplankton To Iron Fertilization
    Cavender-Bares, KK; Mann, EL; Chisholm, SW; Ondrusek, ME; Bidigare, RR
    Limnology and Oceanography. 1999 44(2):237-246
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    Abstract
  81. Seasonal and Depth Variation In Microbial Size Spectra At The Bermuda Atlantic Time Series Station
    Gin, KYH; Chisholm, SW; Olson, RJ
    Deep-Sea Research Part I-Oceanographic Research Papers. 1999 46(7):1221-1245
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    Abstract
  82. Photophysiology of The Marine Cyanobacterium Prochlorococcus: Ecotypic Differences Among Cultured Isolates
    Moore, LR; Chisholm, SW
    Limnology and Oceanography. 1999 44(3):628-638
    Download: Additional Raw Data
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    Abstract
  83. Molecular Phylogeny of Prochlorococcus Ecotypes
    Rocap, Gabrielle; Moore, Lisa R.; Chisholm, Sallie W.
    Bulletin De L'Institut Oceanographique (Monaco). 1999 0(SPEC. ISSUE 19):107-115
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    Abstract
  84. Physiology and Molecular Phylogeny of Coexisting Prochlorococcus Ecotypes
    Moore LR, Rocap G, Chisholm SW
    Nature. 1998 Jun 4;393(6684):464-7.
    Pubmed: 9624000
    Abstract
  85. Rapid Diversification of Marine Picophytoplankton With Dissimilar Light-Harvesting Structures Inferred From Sequences of Prochlorococcus and Synechococcus (Cyanobacteria)
    Urbach E, Scanlan DJ, Distel DL, Waterbury JB, Chisholm SW
    J Mol Evol. 1998 Feb;46(2):188-201.
    Pubmed: 9452521
    Abstract
  86. A Dual Sheath Flow Cytometer For Shipboard Analyses of Phytoplankton Communities From The Oligotrophic Oceans
    Cavender-Bares, KK; Frankel, SL; Chisholm, SW
    Limnology and Oceanography. 1998 43(6):1383-1388
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    Abstract
  87. Winter Presence of Prochlorococcus In The East China Sea
    Jiao, NZ; Yang, YH; Mann, E; Chisholm, SW; Chen, NH
    Chinese Science Bulletin. 1998 43(10):877-878
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  88. Genetic Diversity In Prochlorococcus Populations Flow Cytometrically Sorted From The Sargasso Sea and Gulf Stream
    Urbach, E; Chisholm, SW
    Limnology and Oceanography. 1998 43(7):1615-1630
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    Abstract
  89. Dynamics of Picophytoplankton, Ultraphytoplankton and Bacteria In The Central Equatorial Pacific
    Binder, BJ; Chisholm, SW; Olson, RJ; Frankel, SL; Worden, AZ
    Deep-Sea Research Part Ii-Topical Studies In Oceanography. 1996 43(4-6):907-931
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    Abstract
  90. Iron-Enrichment Bottle Experiments In The Equatorial Pacific: Responses of Individual Phytoplankton Cells
    Zettler, ER; Olson, RJ; Binder, BJ; Chisholm, SW; Fitzwater, SE; Gordon, RM
    Deep-Sea Research Part Ii-Topical Studies In Oceanography. 1996 43(4-6):1017-1029
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    Abstract
  91. Growth of Prochlorococcus, a Photosynthetic Prokaryote, in the Equatorial Pacific Ocean.
    Vaulot D, Marie D, Olson RJ, Chisholm SW
    Science. 1995 Jun 9;268(5216):1480-1482.
    Pubmed: 17843668
    Abstract
  92. Ecosystem Experiments
    CARPENTER, SR; CHISHOLM, SW; KREBS, CJ; SCHINDLER, DW; WRIGHT, RF
    Science. 1995 269(5222):324-327
    Pubmed: 17841247
    Abstract
  93. Cell-Cycle Regulation In Marine Synechococcus Sp Strains
    BINDER, BJ; CHISHOLM, SW
    Applied and Environmental Microbiology. 1995 61(2):708-717
    Pubmed: 16534938
    Abstract
  94. The Iron Hypothesis - Basic Research Meets Environmental-Policy
    CHISHOLM, SW
    Reviews of Geophysics. 1995 33():1277-1286
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  95. Comparative Physiology of Synechococcus and Prochlorococcus - Influence of Light and Temperature On Growth, Pigments, Fluorescence and Absorptive Properties
    MOORE, LR; GOERICKE, R; CHISHOLM, SW
    Marine Ecology-Progress Series. 1995 116(1-3):259-275
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    Abstract
  96. Testing The Iron Hypothesis In Ecosystems of The Equatorial Pacific-Ocean
    MARTIN, JH; COALE, KH; JOHNSON, KS; FITZWATER, SE; GORDON, RM; TANNER, SJ; HUNTER, CN; ELROD, VA; NOWICKI, JL; COLEY, TL; BARBER, RT; LINDLEY, S; WATSON, AJ; VANSCOY, K; LAW, CS; LIDDICOAT, MI; LING, R; STANTON, T; STOCKEL, J; COLLINS, C; ANDERSON, A; BIDIGARE, R; ONDRUSEK, M; LATASA, M; MILLERO, FJ; LEE, K; YAO, W; ZHANG, JZ; FRIEDERICH, G; SAKAMOTO, C; CHAVEZ, F; BUCK, K; KOLBER, Z; GREENE, R; FALKOWSKI, P; CHISHOLM, SW; HOGE, F; SWIFT, R; YUNGEL, J; TURNER, S; NIGHTINGALE, P; HATTON, A; LISS, P; TINDALE, NW
    Nature. 1994 371(6493):123-129
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    Abstract
  97. Simulating Bacterial Clustering Around Phytoplankton Cells In A Turbulent Ocean
    BOWEN, JD; STOLZENBACH, KD; CHISHOLM, SW
    Limnology and Oceanography. 1993 38(1):36-51
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    Abstract
  98. Prochlorophytes
    Urbach E, Robertson DL, Chisholm SW
    Nature. 1992 Jan 16;355(6357):267-70.
    Pubmed: 1731225
    Abstract
  99. Patterns of Cell-Size Change In A Marine Centric Diatom - Variability Evolving From Clonal Isolates
    ARMBRUST, EV; CHISHOLM, SW
    Journal of Phycology. 1992 28(2):146-156
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    Abstract
  100. What Limits Phytoplankton Growth
    CHISHOLM, SW
    Oceanus. 1992 35(3):36-46
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  101. Prochlorococcus-Marinus Nov Gen-Nov Sp - An Oxyphototrophic Marine Prokaryote Containing Divinyl Chlorophyll-A and Chlorophyll-B
    CHISHOLM, SW; FRANKEL, SL; GOERICKE, R; OLSON, RJ; PALENIK, B; WATERBURY, JB; WESTJOHNSRUD, L; ZETTLER, ER
    Archives of Microbiology. 1992 157(3):297-300
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    Abstract
  102. What Controls Phytoplankton Production In Nutrient-Rich Areas of The Open Sea - American-Society-of-Limnology-and-Oceanography Symposium - 22-24 February 1991 San-Marcos, California - Preface
    CHISHOLM, SW; MOREL, FMM
    Limnology and Oceanography. 1991 36(8):U1507-U1511
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  103. Combination of 16S Ribosomal-RNA-Targeted Oligonucleotide Probes With Flow-Cytometry For Analyzing Mixed Microbial-Populations
    AMANN, RI; BINDER, BJ; OLSON, RJ; CHISHOLM, SW; DEVEREUX, R; STAHL, DA
    Applied and Environmental Microbiology. 1990 56(6):1919-1925
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  104. Role of Light and The Cell-Cycle On The Induction of Spermatogenesis In A Centric Diatom
    ARMBRUST, EV; CHISHOLM, SW
    Journal of Phycology. 1990 26(3):470-478
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    Abstract
  105. Relationship Between Dna-Cycle and Growth-Rate In Synechococcus Sp Strain Pcc6301
    BINDER, BJ; CHISHOLM, SW
    Journal of Bacteriology. 1990 172(5):2313-2319
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  106. Silicon Availability and Cell-Cycle Progression In Marine Diatoms
    BRZEZINSKI, MA; OLSON, RJ; CHISHOLM, SW
    Marine Ecology-Progress Series. 1990 67(1):83-96
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  107. A High-Sensitivity Flow Cytometer For Studying Picoplankton
    FRANKEL, SL; BINDER, BJ; CHISHOLM, SW; SHAPIRO, HM
    Limnology and Oceanography. 1990 35(5):1164-1169
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  108. Pigments, Size, and Distribution of Synechococcus In The North-Atlantic and Pacific Oceans
    OLSON, RJ; CHISHOLM, SW; ZETTLER, ER; ARMBRUST, EV
    Limnology and Oceanography. 1990 35(1):45-58
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  109. Spatial and Temporal Distributions of Prochlorophyte Picoplankton In The North-Atlantic Ocean
    OLSON, RJ; CHISHOLM, SW; ZETTLER, ER; ALTABET, MA; DUSENBERRY, JA
    Deep-Sea Research Part A-Oceanographic Research Papers. 1990 37(6):1033-1051
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  110. Effect of Light On The Cell-Cycle of A Marine Synechococcus Strain
    ARMBRUST, EV; BOWEN, JD; OLSON, RJ; CHISHOLM, SW
    Applied and Environmental Microbiology. 1989 55(2):425-432
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  111. Use of A Neural Net Computer-System For Analysis of Flow Cytometric Data of Phytoplankton Populations
    FRANKEL, DS; OLSON, RJ; FRANKEL, SL; CHISHOLM, SW
    Cytometry. 1989 10(5):540-550
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  112. Change In Photosynthetic Capacity Over The Cell-Cycle In Light Dark-Synchronized Amphidinium-Carteri Is Due Solely To The Photocycle
    GERATH, MW; CHISHOLM, SW
    Plant Physiology. 1989 91(3):999-1005
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  113. Chlorophyll Fluorescence From Single Cells - Interpretation of Flow Cytometric Signals
    SOSIK, HM; CHISHOLM, SW; OLSON, RJ
    Limnology and Oceanography. 1989 34(8):1749-1761
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  114. A Novel Free-Living Prochlorophyte Abundant In The Oceanic Euphotic Zone
    CHISHOLM, SW; OLSON, RJ; ZETTLER, ER; GOERICKE, R; WATERBURY, JB; WELSCHMEYER, NA
    Nature. 1988 334(6180):340-343
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  115. Food Selection By Copepods - Discrimination On The Basis of Food Quality
    COWLES, TJ; OLSON, RJ; CHISHOLM, SW
    Marine Biology. 1988 100(1):41-49
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  116. Analysis of Synechococcus Pigment Types In The Sea Using Single and Dual Beam Flow-Cytometry
    OLSON, RJ; CHISHOLM, SW; ZETTLER, ER; ARMBRUST, EV
    Deep-Sea Research Part A-Oceanographic Research Papers. 1988 35(3):425-440
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  117. Flow Cytometric Analysis of Spermatogenesis In The Diatom Thalassiosira-Weissflogii (Bacillariophyceae)
    VAULOT, D; CHISHOLM, SW
    Journal of Phycology. 1987 23(1):132-137
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  118. A Simple-Model of The Growth of Phytoplankton Populations In Light Dark Cycles
    VAULOT, D; CHISHOLM, SW
    Journal of Plankton Research. 1987 9(2):345-366
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  119. Cell-Cycle Response To Nutrient Starvation In 2 Phytoplankton Species, Thalassiosira-Weissflogii and Hymenomonas-Carterae
    VAULOT, D; OLSON, RJ; MERKEL, S; CHISHOLM, SW
    Marine Biology. 1987 95(4):625-630
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  120. Effects of Light and Nitrogen Limitation On The Cell-Cycle of The Dinoflagellate Amphidinium-Carteri
    OLSON, RJ; CHISHOLM, SW
    Journal of Plankton Research. 1986 8(4):785-793
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  121. Effects of Environmental Stresses On The Cell-Cycle of 2 Marine-Phytoplankton Species
    OLSON, RJ; VAULOT, D; CHISHOLM, SW
    Plant Physiology. 1986 80(4):918-925
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  122. Patterns of Individual Cell-Growth In Marine Centric Diatoms
    OLSON, RJ; WATRAS, C; CHISHOLM, SW
    Journal of General Microbiology. 1986 132():1197-1204
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  123. Light and Dark Control of The Cell-Cycle In 2 Marine-Phytoplankton Species
    VAULOT, D; OLSON, RJ; CHISHOLM, SW
    Experimental Cell Research. 1986 167(1):38-52
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  124. Effect of Temperature On Growth and Ingestion Rates of Favella Sp
    AELION, CM; CHISHOLM, SW
    Journal of Plankton Research. 1985 7(6):821-830
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  125. Marine-Phytoplankton Distributions Measured Using Shipboard Flow-Cytometry
    OLSON, RJ; VAULOT, D; CHISHOLM, SW
    Deep-Sea Research Part A-Oceanographic Research Papers. 1985 32(10):1273-1280
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  126. The Effect of Zooplankton Grazing On Estuarine Blooms of The Toxic Dinoflagellate Gonyaulax-Tamarensis
    WATRAS, CJ; GARCON, VC; OLSON, RJ; CHISHOLM, SW; ANDERSON, DM
    Journal of Plankton Research. 1985 7(6):891-908
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  127. Importance of Life-Cycle Events In The Population-Dynamics of Gonyaulax-Tamarensis
    ANDERSON, DM; CHISHOLM, SW; WATRAS, CJ
    Marine Biology. 1983 76(2):179-189
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  128. Cuso4 Treatment of Nuisance Algal Blooms In Drinking-Water Reservoirs
    MCKNIGHT, DM; CHISHOLM, SW; HARLEMAN, DRF
    Environmental Management. 1983 7(4):311-320
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  129. An Inexpensive Flow Cytometer For The Analysis of Fluorescence Signals In Phytoplankton - Chlorophyll and Dna Distributions
    OLSON, RJ; FRANKEL, SL; CHISHOLM, SW; SHAPIRO, HM
    Journal of Experimental Marine Biology and Ecology. 1983 68(2):129-144
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  130. Effects of Photocycles and Periodic Ammonium Supply On 3 Marine-Phytoplankton Species .1. Cell-Division Patterns
    OLSON, RJ; CHISHOLM, SW
    Journal of Phycology. 1983 19(4):522-528
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  131. Effects of Photocycles and Periodic Ammonium Supply On 3 Marine-Phytoplankton Species .2. Ammonium Uptake and Assimilation
    WHEELER, PA; OLSON, RJ; CHISHOLM, SW
    Journal of Phycology. 1983 19(4):528-533
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  132. The Calculation of Insitu Growth-Rates of Phytoplankton Populations From Fractions of Cells Undergoing Mitosis - A Clarification
    MCDUFF, RE; CHISHOLM, SW
    Limnology and Oceanography. 1982 27(4):783-788
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  133. Regulation of Growth In An Estuarine Clone of Gonyaulax-Tamarensis Lebour - Salinity-Dependent Temperature Responses
    WATRAS, CJ; CHISHOLM, SW; ANDERSON, DM
    Journal of Experimental Marine Biology and Ecology. 1982 62(1):25-37
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  134. Persistence of Cell-Division Phasing In Marine-Phytoplankton In Continuous Light After Entrainment To Light-Dark Cycles
    CHISHOLM, SW; BRAND, LE
    Journal of Experimental Marine Biology and Ecology. 1981 51(2-3):107-118
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  135. Temporal Patterns of Cell-Division In Unicellular Algae
    CHISHOLM, SW
    Canadian Bulletin of Fisheries and Aquatic Sciences. 1981 (210):150-181
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  136. Effects of Copper Toxicity On Silicic-Acid Uptake and Growth In Thalassiosira-Pseudonana
    RUETER, JG; CHISHOLM, SW; MOREL, FMM
    Journal of Phycology. 1981 17(3):270-278
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  137. Phytoplankton Lipids - Interspecific Differences and Effects of Nitrate, Silicate and Light-Dark Cycles
    SHIFRIN, NS; CHISHOLM, SW
    Journal of Phycology. 1981 17(4):374-384
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  138. Changes In The Soluble Silicon Pool Size In The Marine Diatom Thalassiosira-Weisflogii
    BINDER, BJ; CHISHOLM, SW
    Marine Biology Letters. 1980 1(4):205-212
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  139. Influence of Environmental-Factors and Population Composition On The Timing of Cell-Division In Thalassiosira-Fluviatilis (Bacillariophyceae) Grown On Light
    CHISHOLM, SW; COSTELLO, JC
    Journal of Phycology. 1980 16(3):375-383
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  140. Comparison of 2 Methods For Measuring Phosphate-Uptake By Monochrysis-Lutheri Droop Grown In Continuous Culture
    BURMASTER, DE; CHISHOLM, SW
    Journal of Experimental Marine Biology and Ecology. 1979 39(2):187-202
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  141. Sunday - Simulation-Model of An Arctic Daphnia Population
    STROSS, RG; NOBBS, PA; CHISHOLM, SW
    Oikos. 1979 32(3):349-362
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  142. Silicic-Acid Incorporation In Marine Diatoms On Light-Dark Cycles - Use As An Assay For Phased Cell-Division
    CHISHOLM, SW; AZAM, F; EPPLEY, RW
    Limnology and Oceanography. 1978 23(3):518-529
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  143. Marine Alga Platymonas Sp Accumulates Silicon Without Apparent Requirement
    FUHRMAN, JA; CHISHOLM, SW; GUILLARD, RRL
    Nature. 1978 272(5650):244-246
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  144. Particulate Organic-Matter In Surface Waters off Southern-California and Its Relationship To Phytoplankton
    EPPLEY, RW; HARRISON, WG; CHISHOLM, SW; STEWART, E
    Journal of Marine Research. 1977 35(4):671-696
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  145. Silicic-Acid Uptake and Incorporation By Natural Marine-Phytoplankton Populations
    AZAM, F; CHISHOLM, SW
    Limnology and Oceanography. 1976 21(3):427-435
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  146. Phosphate Uptake Kinetics In Euglena-Gracilis (Z) (Euglenophyceae) Grown On Light-Dark Cycles .1. Synchronized Batch Cultures
    CHISHOLM, SW; STROSS, RG
    Journal of Phycology. 1976 12(2):210-217
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  147. Phosphate Uptake Kinetics In Euglena-Gracilis (Z) (Euglenophyceae) Grown In Light-Dark Cycles .2. Phased Po4-Limited Cultures
    CHISHOLM, SW; STROSS, RG
    Journal of Phycology. 1976 12(2):217-222
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  148. Phased Cell-Division In Natural-Populations of Marine Dinoflagellates From Shipboard Cultures
    WEILER, CS; CHISHOLM, SW
    Journal of Experimental Marine Biology and Ecology. 1976 25(3):239-247
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  149. Simulation of Algal Growth and Competition In A Phosphate-Limited Cyclostat
    CHISHOLM, SW; NOBBS, PA; STROSS, RG
    Abstracts of Papers of The American Chemical Society. 1975 (169):42-42
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  150. Environmental and Intrinsic Control of Filtering and Feeding Rates In Arctic Daphnia
    CHISHOLM, SW; STROSS, RG; NOBBS, PA
    Journal of The Fisheries Research Board of Canada. 1975 32(2):219-226
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  151. Light-Dark-Phased Cell-Division In Euglena-Gracilis (Z) (Euglenophyceae) In Po4-Limited Continuous Culture
    CHISHOLM, SW; STROSS, RG; NOBBS, PA
    Journal of Phycology. 1975 11(4):367-373
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  152. Seasonal-Variation of Manganese In A Eutrophic Lake
    HOWARD, HH; CHISHOLM, SW
    American Midland Naturalist. 1975 93(1):188-197
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  153. Causes of Daily Rhythms In Photosynthetic Rates of Phytoplankton
    STROSS, RG; CHISHOLM, SW; DOWNING, TA
    Biological Bulletin. 1973 145(1):200-209
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